View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_50 (Length: 357)
Name: NF3726_high_50
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_50 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 15658978 - 15659318
Alignment:
| Q |
1 |
ctaatgatgttgatttgattcgaccggcaatgacacgttttgctacctcttatttgacatttgggtgtttgaatgaacatcaaaatcaacttattgattt |
100 |
Q |
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| T |
15658978 |
ctaatgatgttgattcgattcgaccggcaatgacacattttgctacctcttatttgacattggggtgtttgaatgaacatcaaaatcaacttattgattt |
15659077 |
T |
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| Q |
101 |
gttcaagtcaaacgagtggaagactagtaaacttgccaagattaaagatggaaagatcttgcaaaatgctgttttaaggaaggttttttggaaggatgtt |
200 |
Q |
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| T |
15659078 |
gttcaagtcaaacgagtggaagactagtaaacttgccaagagtaaagatggaaagatcgtgcaaaatgttgttttaagtaaggttttttggaaggatgtt |
15659177 |
T |
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| Q |
201 |
ttgaactgtttgaggggtgctttcccacttgtaaaagtgttgcgtatggtggactcggaagaaaaagcagccatgggatatatttatgaagagatggatc |
300 |
Q |
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| T |
15659178 |
ttgaactgtttgaggggtgctttcccacttgtaaaagtgttgtgtatggtggactgggaagaaaaagcagccatgggatatatttatgaagagatggatc |
15659277 |
T |
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| Q |
301 |
gtgctaaagagaagattcgaaccaactttagtggccaagct |
341 |
Q |
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| T |
15659278 |
gtgctaaagagaagattcgaaccaactttagtggccaagct |
15659318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 244921 - 245244
Alignment:
| Q |
7 |
atgttgatttgattcgaccggcaatgacacgttttgctacctcttatttgacatttgggtgtttgaatgaacatcaaaatcaacttattgatttgttcaa |
106 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244921 |
atgttgatttgattcgaccaacaatgacatgttttgctacctcttatttgacattggggtgtttgaatgaacatcaaaatcaacttattgatttgttcaa |
245020 |
T |
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| Q |
107 |
gtcaaacgagtggaagactagtaaacttgccaagattaaagatggaaagatcttgcaaaatgctgttttaaggaaggttttttggaaggatgttttgaac |
206 |
Q |
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|||||||||||||||||||||||||||||| | || ||||||||||||| || |||||||||||||||||| ||| |||||| |||| ||||||||||| |
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| T |
245021 |
gtcaaacgagtggaagactagtaaacttgctatgagtaaagatggaaaggtcgtgcaaaatgctgttttaaataagttttttttgaagaatgttttgaac |
245120 |
T |
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| Q |
207 |
tgtttgaggggtgctttcccacttgtaaaagtgttgcgtatggtggactcggaagaaaaagcagccatgggatatatttatgaagagatggatcgtgcta |
306 |
Q |
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||| | ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
245121 |
tgtctaaggggtgcttttccacttgttaaagtgttgcgcatggtggactcggaagaaaaggcagccatgggatatatttatgaagagatggatcgtgcta |
245220 |
T |
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| Q |
307 |
aagagaagattcgaaccaacttta |
330 |
Q |
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| T |
245221 |
aagagaagatttgaaccaacttta |
245244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 245592 - 245291
Alignment:
| Q |
9 |
gttgatttgattcgaccggcaatgacacgttttgctacctcttatttgacatttgggtgtttgaatgaacatcaaaatcaacttattgatttgttcaagt |
108 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
245592 |
gttgatttgattcgaccgacaatgacacgttttgctacctcttatttgacattggggtgtttgaatgaacatcaaaatcaacttattgatttgttaaagt |
245493 |
T |
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| Q |
109 |
caaacgagtggaagactagtaaacttgccaagattaaagatggaaagatcttgc--aaaatgctgttttaaggaaggttttttggaaggatgttttgaac |
206 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||||| |||||||| | | ||||||||||||||||||||||| |
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| T |
245492 |
caaacgagtggaagactagtaaacttgctaagagtaaagatggaaagatcgtgcaaaaaatgttgttttaaatatgtttttttggaaggatgttttgaac |
245393 |
T |
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| Q |
207 |
tgtttgaggggtgctttcccacttgtaaaagtgttgcgtatggtggactcggaagaaaaagcagccatgggatatatttatgaagagatggatcgtgcta |
306 |
Q |
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||| ||| |||||||||| || ||| |||||| || | ||| |||||||||||||||| ||||||||| |||||||||||| |||||||||| ||| || |
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| T |
245392 |
tgtctgataggtgctttccgacatgttaaagtgctgtgcatgatggactcggaagaaaaggcagccatgagatatatttatggagagatggattgtgata |
245293 |
T |
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| Q |
307 |
aa |
308 |
Q |
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|| |
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| T |
245292 |
aa |
245291 |
T |
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