View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_high_52 (Length: 351)

Name: NF3726_high_52
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_high_52
NF3726_high_52
[»] chr4 (4 HSPs)
chr4 (219-335)||(10577576-10577692)
chr4 (11-139)||(10577449-10577577)
chr4 (99-222)||(34332655-34332778)
chr4 (96-164)||(7144169-7144237)
[»] chr7 (8 HSPs)
chr7 (25-222)||(5637210-5637407)
chr7 (95-221)||(6272196-6272324)
chr7 (112-158)||(18497054-18497100)
chr7 (96-223)||(11466998-11467124)
chr7 (95-186)||(22334285-22334376)
chr7 (98-208)||(21536516-21536625)
chr7 (95-141)||(30406639-30406685)
chr7 (96-188)||(13709070-13709162)
[»] chr1 (6 HSPs)
chr1 (16-224)||(33175580-33175786)
chr1 (34-223)||(34931905-34932095)
chr1 (96-189)||(19256933-19257025)
chr1 (83-186)||(14581153-14581256)
chr1 (97-187)||(30743499-30743589)
chr1 (96-223)||(23420571-23420699)
[»] chr5 (3 HSPs)
chr5 (24-224)||(22930887-22931085)
chr5 (24-63)||(30791479-30791518)
chr5 (24-61)||(14207842-14207879)
[»] chr8 (4 HSPs)
chr8 (98-190)||(13581946-13582038)
chr8 (96-175)||(8541721-8541800)
chr8 (98-219)||(24926750-24926873)
chr8 (26-61)||(35134691-35134726)
[»] chr3 (4 HSPs)
chr3 (142-225)||(26419870-26419955)
chr3 (143-224)||(11475955-11476037)
chr3 (97-177)||(8713956-8714036)
chr3 (97-177)||(9065843-9065923)
[»] chr6 (4 HSPs)
chr6 (97-225)||(16440417-16440544)
chr6 (97-179)||(17859081-17859163)
chr6 (95-158)||(22263444-22263508)
chr6 (134-224)||(22557936-22558028)
[»] chr2 (1 HSPs)
chr2 (92-148)||(19593107-19593163)
[»] scaffold0804 (1 HSPs)
scaffold0804 (83-186)||(870-973)
[»] scaffold0280 (1 HSPs)
scaffold0280 (15-63)||(17223-17271)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 219 - 335
Target Start/End: Original strand, 10577576 - 10577692
Alignment:
Q  219 aattccgataacattctatcacatgaggtgtgtgcctctatgcggtgaggcgcacatgatcccttctcatgttgccctgagtgtttaagattatgggtta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  10577576 aattccgataacattctatcacatgaggtgtgtgcctctatgcggtgaggcgcacatgatcccttctcatgttgccctgagtggttaagattgtgggtta 10577675  T
Q  319 acattctatcacatatt 335  Q
    |||||||||||||||||    
T  10577676 acattctatcacatatt 10577692  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 10577449 - 10577577
Alignment:
Q  11 catagggtcatagtctactttcttaaatcaaaagacacgtcataaactaataactaacatctttaatccgagcaaagacaaaatgggggattcaaggatt 110  Q
    |||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||  ||||||||||||||| |||||||||||||||    
T  10577449 catagggtcatattctactttcttaaatcaaaagacacataataaactaataactaacctctttaatttgagcaaagacaaaataggggattcaaggatt 10577548  T
Q  111 ttctaatcgtcgttacgcttctaaatcaa 139  Q
    |||||||||||||||||||||||||||||    
T  10577549 ttctaatcgtcgttacgcttctaaatcaa 10577577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 34332778 - 34332655
Alignment:
Q  99 gattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccactttatcttttc 198  Q
    |||||||||||   |||||| | ||||||| ||| |||||||||||||||||||||||||  |||  | |||||||||  | |||||||||||||||||     
T  34332778 gattcaaggataccctaatctttgttacgcatctgaatcaaaccaacctaatctcgcattaggcaagacaattaaaactcttcaaccactttatcttttt 34332679  T
Q  199 tgttttatttacttctaataaatt 222  Q
      |||||| |||||||||||||||    
T  34332678 atttttatgtacttctaataaatt 34332655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 7144169 - 7144237
Alignment:
Q  96 ggggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcag 164  Q
    |||||||||| ||||  |||||||||||||| | | |||||||||||||||||||||| ||||| ||||    
T  7144169 ggggattcaatgattccctaatcgtcgttacacatttaaatcaaaccaacctaatctcacattgggcag 7144237  T

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Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 5637210 - 5637407
Alignment:
Q  25 ctactttcttaaatcaaaagacacgtcataaactaataactaacatctttaatccgagcaaagacaaaatgggggattcaaggattttctaatcgtcgtt 124  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||  | ||||| | | ||||||  ||| |||||||||||||||| |||||||||||||    
T  5637210 ctactttcttaaatcaaaagacatgtcataaactagtaactaactgcgttaattccaacaaagatgaaa-gggggattcaaggattctctaatcgtcgtt 5637308  T
Q  125 acgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccacttt-atcttttctgttttatttacttctaataaatt 222  Q
    |||| ||| ||||| ||||||||||||||||| |  |||  | ||||| |||  |||||||||||| ||||||| | || |||||||||||||||||||    
T  5637309 acgcatctgaatcagaccaacctaatctcgcactaggcaagacaattataacgctacaaccactttcatcttttatattctatttacttctaataaatt 5637407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 221
Target Start/End: Complemental strand, 6272324 - 6272196
Alignment:
Q  95 gggggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccacttt-atc 193  Q
    ||||||||||| |||| ||||||||||||||||  ||| |||||||||||||||||||| ||||| ||     |||| ||||| | |||||||||| |||    
T  6272324 gggggattcaaagattctctaatcgtcgttacgtatctgaatcaaaccaacctaatctcacattgggccaggcaatttaaaccatgcaaccactttcatc 6272225  T
Q  194 ttttctgttttatttac-ttctaataaat 221  Q
    ||| || |||||||||| |||||||||||    
T  6272224 tttcctcttttatttacattctaataaat 6272196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 18497054 - 18497100
Alignment:
Q  112 tctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcatt 158  Q
    ||||||||||||||||| | | |||||||||||||||||||||||||    
T  18497054 tctaatcgtcgttacgcatatgaatcaaaccaacctaatctcgcatt 18497100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 11467124 - 11466998
Alignment:
Q  96 ggggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccacttt-atct 194  Q
    ||||||| |||||||  |||||||||||||||| ||| |||||||  ||| |||||||||||||  || || ||| |||||||| | |||||||| ||      
T  11467124 ggggatttaaggattccctaatcgtcgttacgcatctgaatcaaataaacttaatctcgcattggaca-aacaatcaaaaccttgctaccactttcattg 11467026  T
Q  195 tttctgttttatttacttctaataaattc 223  Q
    ||||| || || |||||||||||||||||    
T  11467025 tttctattcta-ttacttctaataaattc 11466998  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 22334376 - 22334285
Alignment:
Q  95 gggggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaacca 186  Q
    |||||||| |||||||  ||||||  |||||| ||| | ||||||   ||||||||||||||||| |||||| |||||||||| | ||||||    
T  22334376 gggggattaaaggattccctaatcaccgttactcttttgaatcaacaaaacctaatctcgcattgggcagaacaattaaaaccctgcaacca 22334285  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 21536625 - 21536516
Alignment:
Q  98 ggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccactttatctttt 197  Q
    ||||||||||||| | ||||||| ||||  | ||| |||||  | ||||||||||||||||| || | | |||||||| | |||||||||||  ||||||    
T  21536625 ggattcaaggattct-taatcgttgttaaacatcttaatcagccaaacctaatctcgcattgggctgcacaattaaaagcctacaaccacttggtctttt 21536527  T
Q  198 ctgttttattt 208  Q
    || ||||||||    
T  21536526 ctcttttattt 21536516  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 30406639 - 30406685
Alignment:
Q  95 gggggattcaaggattttctaatcgtcgttacgcttctaaatcaaac 141  Q
    |||||||||||| ||| |||||||| |||||| ||||||||||||||    
T  30406639 gggggattcaagaattctctaatcgccgttacacttctaaatcaaac 30406685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 13709070 - 13709162
Alignment:
Q  96 ggggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccact 188  Q
    |||||||||||||||  |||||||||||||| ||||  ||||| |  ||| |||||||||||||  ||  | |||||||||| | ||||||||    
T  13709070 ggggattcaaggattccctaatcgtcgttacacttccgaatcacaaaaacataatctcgcattgaacaagacaattaaaaccatgcaaccact 13709162  T

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Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 33175786 - 33175580
Alignment:
Q  16 ggtcatagtctactttcttaaatcaaaagacacgtcataaactaataactaacatctttaatccgagcaaagacaaaatgggggattcaaggattttcta 115  Q
    ||||||| |||| |||  ||||||||| |||| ||||||||||||||| ||||  | ||||| | | ||||||   ||| |||||||||||||||| |||    
T  33175786 ggtcatattctaattttgtaaatcaaa-gacaagtcataaactaataattaaccgcattaattccaacaaagaaggaat-ggggattcaaggatttccta 33175689  T
Q  116 atcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccactttatcttttctgttttatttacttcta 215  Q
    ||||||||||||| ||| | |||||||||| |||||||| |||| || | | |||||||||||||| ||| |||||||| || |  ||||||||||||||    
T  33175688 atcgtcgttacgcatctgagtcaaaccaacataatctcgtattgagcgggacaattaaaaccttaccaccgctttatctcttttagtttatttacttcta 33175589  T
Q  216 ataaattcc 224  Q
    |||||||||    
T  33175588 ataaattcc 33175580  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 34932095 - 34931905
Alignment:
Q  34 taaatcaaaagacacgtcataaactaataactaacatctttaatccgagcaaagacaaaatgggggattcaaggattttctaatcgtcgttacgcttcta 133  Q
    |||||||||||||  |||||||||||||||  |||| |  |||| | | ||||||| |||  ||||||| |||||||   |||||| || |||||   |     
T  34932095 taaatcaaaagacgggtcataaactaataatcaacaacaataattccaacaaagacgaaagtggggatttaaggattccttaatcgccgctacgcacttg 34931996  T
Q  134 aatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccacttt-atcttttctgttttatttacttctaataaattc 223  Q
    |||| |||||||||||| |||||||| ||| |  |||||||||| | |||||||| | ||||||| | |||||||||||||||||||||||    
T  34931995 aatccaaccaacctaatatcgcattgagcaaaccaattaaaaccctgcaaccactctcatcttttatattttatttacttctaataaattc 34931905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 19257025 - 19256933
Alignment:
Q  96 ggggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccactt 189  Q
    |||| ||||||||||   ||||||||||||| ||||||||||| |  ||| |||||||| |||| |||||| |||||||||| |||||||||||    
T  19257025 gggggttcaaggattccataatcgtcgttacacttctaaatcacaa-aacataatctcgtattgagcagaacaattaaaaccctacaaccactt 19256933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 14581153 - 14581256
Alignment:
Q  83 caaagacaaaatgggggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttaca 182  Q
    ||||||| || |||||||||||||||||  |||||||  ||||    ||| |||||| | ||||||| |||||||||||||  |||||||||||| | ||    
T  14581153 caaagacgaagtgggggattcaaggattccctaatcgcagttaaatatctgaatcaatcaaacctaacctcgcattgtgcaagataattaaaaccctgca 14581252  T
Q  183 acca 186  Q
    ||||    
T  14581253 acca 14581256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 30743589 - 30743499
Alignment:
Q  97 gggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccac 187  Q
    ||||||||| ||||| ||||||| |||||  ||||||||||||   ||| |||||| |||||| | || | |||||||||||| |||||||    
T  30743589 gggattcaatgatttcctaatcgccgttaaacttctaaatcaacaaaacttaatcttgcattgggtaggacaattaaaaccttgcaaccac 30743499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 23420699 - 23420571
Alignment:
Q  96 ggggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccac-tttatct 194  Q
    |||||||| ||||||  || ||||| ||||||| ||| |||||||||||||||||   |||||| |||| | |  ||||||| | ||||||| |||||||    
T  23420699 ggggattctaggattcccttatcgttgttacgcatctgaatcaaaccaacctaatagtgcattgggcaggacatgtaaaaccatgcaaccacttttatct 23420600  T
Q  195 tttctgttttatttacttctaataaattc 223  Q
    |||   || ||||  ||||||||||||||    
T  23420599 ttttcattctattcgcttctaataaattc 23420571  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 22930887 - 22931085
Alignment:
Q  24 tctactttcttaaatcaaaagacacgtcataaactaataactaacatctttaatccgagcaaagacaaaatgggggattcaaggattttctaatcgtcgt 123  Q
    ||||||||| |||||||||||||| ||||| |||||| | |||||  | ||||| | | ||||||| |||  ||||||| ||| |||| ||||||| |||    
T  22930887 tctactttcgtaaatcaaaagacaagtcat-aactaacagctaactgcattaattcaaacaaagacgaaa--ggggattgaagaatttcctaatcgccgt 22930983  T
Q  124 tacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccacttt-atcttttctgttttatttacttctaataaatt 222  Q
    ||||| | | |||||||||| || ||||||| |||| ||| || |||||||||  | |||| ||||| || |||||| || ||||||||| ||||| |||    
T  22930984 tacgcatttgaatcaaaccacccgaatctcgtattgggcaaaacaattaaaacaatgcaactactttcatattttctattctatttacttttaatacatt 22931083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 30791479 - 30791518
Alignment:
Q  24 tctactttcttaaatcaaaagacacgtcataaactaataa 63  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  30791479 tctactttcttaaatcaaacgacatgtcataaactaataa 30791518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 14207879 - 14207842
Alignment:
Q  24 tctactttcttaaatcaaaagacacgtcataaactaat 61  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  14207879 tctactttcttaaatcgaaagacatgtcataaactaat 14207842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 13582038 - 13581946
Alignment:
Q  98 ggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccacttt 190  Q
    ||||||||||||| ||||| ||||||||| ||||| ||||| |  ||||||||||||||||| | || | |||| ||||||| ||||||||||    
T  13582038 ggattcaaggattctctaaacgtcgttacacttctgaatcacaataacctaatctcgcattgggtaggacaattgaaaccttgcaaccacttt 13581946  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 8541721 - 8541800
Alignment:
Q  96 ggggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaa 175  Q
    ||||||||| |||||  |||||| ||||||  ||| | ||||| | |||||||||||||||||| |||||||||||||||    
T  8541721 ggggattcatggattccctaatcttcgttatacttttcaatcacaacaacctaatctcgcattgggcagaataattaaaa 8541800  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 24926873 - 24926750
Alignment:
Q  98 ggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccacttt-atcttt 196  Q
    |||||||||||||  ||||||| | |||| | ||| ||||| ||||||||||||| | |||| |||| | |||||||||| | |||||||||| || |||    
T  24926873 ggattcaaggattccctaatcgccattacacatctgaatcacaccaacctaatcttgtattgggcaggacaattaaaaccctgcaaccactttcatgttt 24926774  T
Q  197 tctgttt-tatttacttctaataa 219  Q
    ||| ||| |||||||||| |||||    
T  24926773 tctatttctatttacttcaaataa 24926750  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 35134726 - 35134691
Alignment:
Q  26 tactttcttaaatcaaaagacacgtcataaactaat 61  Q
    |||||||||||||||||||||| |||||||||||||    
T  35134726 tactttcttaaatcaaaagacatgtcataaactaat 35134691  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 26419870 - 26419955
Alignment:
Q  142 caacctaatctcgcattgtgcagaataattaaaaccttacaaccacttt-atcttttctgttt-tatttacttctaataaattccg 225  Q
    |||| ||||||||||||| |  ||| |||||||||  ||||||||| || ||||||||| ||| ||||||||||||||||||||||    
T  26419870 caacataatctcgcattgggtcgaacaattaaaacactacaaccacgttcatcttttctatttctatttacttctaataaattccg 26419955  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 11475955 - 11476037
Alignment:
Q  143 aacctaatctcgcattgtgcagaataattaaaaccttacaaccactttatcttttctgttttatttac-ttctaataaattcc 224  Q
    |||||||| | |||||| |||| |  ||||||||||||||||||||||   | || |||||||||||| ||||||||||||||    
T  11475955 aacctaatattgcattgggcaggactattaaaaccttacaaccacttttaatcttttgttttatttactttctaataaattcc 11476037  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 8714036 - 8713956
Alignment:
Q  97 gggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaacc 177  Q
    ||||||||||||||  |||||||| ||||  ||||| |||||| | |||||||||| |||||| |||| | |||| |||||    
T  8714036 gggattcaaggattccctaatcgttgttaatcttctgaatcaaccaaacctaatcttgcattgggcaggacaatttaaacc 8713956  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 9065923 - 9065843
Alignment:
Q  97 gggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaacc 177  Q
    ||||||||||||||  |||||||| ||||  ||||| |||||| | |||||||||| |||||| |||| | |||| |||||    
T  9065923 gggattcaaggattccctaatcgttgttaatcttctgaatcaaccaaacctaatcttgcattgggcaggacaatttaaacc 9065843  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 225
Target Start/End: Original strand, 16440417 - 16440544
Alignment:
Q  97 gggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttacaaccactttatcttt 196  Q
    |||||||||||||   ||||| ||||||||   ||| ||||||||| |||||||||| |||||  ||  | || ||||| ||| |||||| ||||||| |    
T  16440417 gggattcaaggataccctaattgtcgttacaaatctgaatcaaacctacctaatctcacattggacaagacaa-taaaaacttgcaaccagtttatctct 16440515  T
Q  197 tctgttttatttacttctaataaattccg 225  Q
    | | |||||||||||| ||||||||||||    
T  16440516 tttattttatttacttataataaattccg 16440544  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 17859163 - 17859081
Alignment:
Q  97 gggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaacctt 179  Q
    ||||||||||||||  |||||| ||||||| | ||| ||||| || |||||||||| |||||| |||||  ||||||| ||||    
T  17859163 gggattcaaggattccctaatcatcgttacacatctgaatcacacaaacctaatcttgcattgggcagagcaattaaaccctt 17859081  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 22263444 - 22263508
Alignment:
Q  95 gggggattcaaggattttctaatcgtcgttacgcttctaaatcaaac-caacctaatctcgcatt 158  Q
    |||||||||||||||||||||||||  ||||| | ||||||| | ||  ||||||||||||||||    
T  22263444 gggggattcaaggattttctaatcgatgttacacatctaaataacacaaaacctaatctcgcatt 22263508  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 22558028 - 22557936
Alignment:
Q  134 aatcaaaccaacctaatctcgcattgtgcagaataatt-aaaaccttacaaccactttatct-tttctgttttatttacttctaataaattcc 224  Q
    ||||| ||||| ||||||||||||||||||  | |||| |||| ||| |||||||||||||| |||   |||| |||||||| ||||||||||    
T  22558028 aatcagaccaatctaatctcgcattgtgcacgacaattaaaaaacttgcaaccactttatctcttttatttttttttacttcaaataaattcc 22557936  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 19593107 - 19593163
Alignment:
Q  92 aatgggggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaaccta 148  Q
    ||||||||||||||| |||| |||||||| ||||| | ||| |||||||||||||||    
T  19593107 aatgggggattcaagaatttcctaatcgttgttacacatctgaatcaaaccaaccta 19593163  T

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Target: scaffold0804 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 870 - 973
Alignment:
Q  83 caaagacaaaatgggggattcaaggattttctaatcgtcgttacgcttctaaatcaaaccaacctaatctcgcattgtgcagaataattaaaaccttaca 182  Q
    ||||||| || |||||||||||||||||  |||||||  ||||    ||| |||||| | ||||||| |||||||||||||  |||||||||||| | ||    
T  870 caaagacgaagtgggggattcaaggattccctaatcgcagttaaatatctgaatcaatcaaacctaacctcgcattgtgcaagataattaaaaccctgca 969  T
Q  183 acca 186  Q
    ||||    
T  970 acca 973  T

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Target: scaffold0280 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 17223 - 17271
Alignment:
Q  15 gggtcatagtctactttcttaaatcaaaagacacgtcataaactaataa 63  Q
    |||||||| |||||||||||||||| |||||||  ||||| ||||||||    
T  17223 gggtcatattctactttcttaaatctaaagacaattcatacactaataa 17271  T

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