View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_72 (Length: 309)
Name: NF3726_high_72
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_72 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 5705783 - 5705484
Alignment:
| Q |
1 |
ctctatagcaataccacatagcggaatttagtcaaacctcttttatttatgcgatccgcgattgacatcacagattttgatttcgtagattttttatgca |
100 |
Q |
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| T |
5705783 |
ctctatagcattaccacatagcggaatttagtcaaacctcttttatttatgcgatccgcgattaacatcacagattttgatttcgtagattttttatgca |
5705684 |
T |
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| Q |
101 |
aatgattataaatctcaaatttattattttcagtgttacttgaataggatcgatattgagctcatgattctacttcatgattgatttgagctttgagact |
200 |
Q |
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| T |
5705683 |
aatgattataaatctcaaatttattattttcagtgttacttgaataggatcgatattgagctcatgattctacttcatgattgatttgagctttgagact |
5705584 |
T |
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| Q |
201 |
caaatgtaacttcgatttgtgttcctcaggttttgagctggaaccctcgcgctttatactttcctaattttgcaagtgcagaacaatgtgatagaataat |
300 |
Q |
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| T |
5705583 |
caaatgtaactttgatttgtgttcctcaggttttgagctggaaccctcgcgctttatactttcctaattttgcaagtgcagaacaatgtgatagaataat |
5705484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 39750053 - 39750116
Alignment:
| Q |
228 |
aggttttgagctggaaccctcgcgctttatactttcctaattttgcaagtgcagaacaatgtga |
291 |
Q |
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| T |
39750053 |
aggttttgagctggaagccacgagctctgtattttcctaattttgcaactgctgaacaatgtga |
39750116 |
T |
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