View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_high_79 (Length: 299)
Name: NF3726_high_79
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_79 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 40048575 - 40048295
Alignment:
| Q |
1 |
agcaccagcagcgtcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaaccattagtcccgacattaccagacacctcagattcc |
100 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40048575 |
agcacaagcagcatcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaaccattagtcccgacattaccagacacctcagattcc |
40048476 |
T |
|
| Q |
101 |
accccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacctaaactcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40048475 |
accccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacctaaactcac |
40048376 |
T |
|
| Q |
201 |
aactcatatcaccaaaaagcggcggattaacaatcttggcaccggatgactcagctttctcgcatctcaaagcggggttct |
281 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40048375 |
aactcatatcagcaaaaagcggcggattaacaatcttggcaccggatgactcagctttctcgcatctcaaagcagggttct |
40048295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 235
Target Start/End: Original strand, 22056082 - 22056210
Alignment:
| Q |
107 |
gacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacctaaactcacaactca |
206 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||||||| | |||||| ||||||||||| ||||||| ||||| || || | ||||||| || |||| |
|
|
| T |
22056082 |
gacgacatcacaacaatccttaaaaaggcgaaaacattctccgtcctaatccgtctcctaaaaacaacagaaatcatgagcagcgtaaactcgcagctca |
22056181 |
T |
|
| Q |
207 |
tatcaccaaaaagcggcggattaacaatc |
235 |
Q |
| |
|
| || |||||| |||||| ||||||||| |
|
|
| T |
22056182 |
tcacagcaaaaaacggcggcttaacaatc |
22056210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University