View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_82 (Length: 295)
Name: NF3726_high_82
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_82 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 60 - 276
Target Start/End: Original strand, 35449459 - 35449674
Alignment:
| Q |
60 |
acaaaatagattgcaattgagctttcaatatcaagtttagaataatgaagattgcgattgtaacttccctcatttcatttgtgtatctcgttaactacta |
159 |
Q |
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| T |
35449459 |
acaaaatagattgcaattgagctttcaatatcaagtttagaataataaagattgcgattgtaacttcactcatttcatttgtgtatcttgttaactacta |
35449558 |
T |
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| Q |
160 |
catctttttatcatgtctctagaatattgagtatgtattttaaattttcagaatgatagaaattaaaacaaatacaagaagaaaaaagtcatcatatctc |
259 |
Q |
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| T |
35449559 |
catctttttatcatgtctatagaatattgagtatgtattttaaattttcagaatgatagaaattaaaacgaatacaagcagaaaaaagtcatcata-ctc |
35449657 |
T |
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| Q |
260 |
ttttatggtaggcgcac |
276 |
Q |
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| T |
35449658 |
ttttatggtaggcgcac |
35449674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 35449427 - 35449465
Alignment:
| Q |
1 |
taatagcatgctggattctcagttgctgtaaaacaaaat |
39 |
Q |
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| T |
35449427 |
taatagcatgctggattctcagttgctgtaaaacaaaat |
35449465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 35441307 - 35441377
Alignment:
| Q |
156 |
actacatctttttatcatgtctctagaatattgagtatgtattttaaattttcagaatgatagaaattaaa |
226 |
Q |
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| T |
35441307 |
actacatctttttatcatgtctttggaatagtaactatgtattttgaatttttagaatgatacaagttaaa |
35441377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 1865175 - 1865115
Alignment:
| Q |
45 |
atttagagctggaatacaaaatagattgcaattgagctttcaatatcaagtttagaataat |
105 |
Q |
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| T |
1865175 |
atttagagccggaaaacaaaatagattacaattgaactttgaatatcatacttagaataat |
1865115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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