View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_high_83 (Length: 294)

Name: NF3726_high_83
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_high_83
NF3726_high_83
[»] chr1 (1 HSPs)
chr1 (10-279)||(14261254-14261528)
[»] chr2 (2 HSPs)
chr2 (80-245)||(17920592-17920762)
chr2 (66-197)||(35905635-35905770)
[»] chr7 (2 HSPs)
chr7 (66-223)||(2764656-2764817)
chr7 (101-259)||(36966805-36966963)
[»] chr6 (1 HSPs)
chr6 (142-235)||(2281442-2281535)
[»] chr4 (1 HSPs)
chr4 (66-210)||(55280281-55280429)
[»] scaffold0047 (1 HSPs)
scaffold0047 (166-238)||(73085-73157)
[»] chr5 (1 HSPs)
chr5 (77-178)||(18939629-18939735)
[»] chr3 (1 HSPs)
chr3 (203-239)||(40488483-40488519)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 14261254 - 14261528
Alignment:
Q  10 acatcatcagtagtccaattagagaacgacattctaaaactttcccataagtcgggcaaaaaattcaactatcaaaataataattacaatcaatgtcttc 109  Q
    ||||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14261254 acatcatcaataatccaattagagaatgacattctaaaaatttcccataagtcgggcaaaaaattcaactatcaaaataatagttacaatcaatgtcttc 14261353  T
Q  110 ttaaatctctaggaat-----aaacatcaaaccatcaccaactatggtaattttaacaacaagagagcaaacccaaaatatgtatcccaaacaaacacaa 204  Q
    ||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14261354 ttaaatctctaggaattgacaaaacatcaaaccatcaccaactatggtaattttaacaacaagagagcaaacccaaaatatgtatcccaaacaaacacaa 14261453  T
Q  205 agagaagacaaaactacttagataaattatctaaataactaaattgataacaaaattctattgtcacgctctctg 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14261454 agagaagacaaaactacttagataaattatctaaataactaaattgataacaaaattctaatgtcacgctctctg 14261528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 245
Target Start/End: Original strand, 17920592 - 17920762
Alignment:
Q  80 atcaaaataataattacaatcaatgtcttcttaaatctctaggaataaaca----tcaaaccatca-ccaactatggtaattttaacaacaagagagcaa 174  Q
    |||||| ||||  ||||||||||||||||| ||||||||||||||  ||||    |||||  |||| ||||||||| | ||| ||||||| |||||||||    
T  17920592 atcaaagtaatggttacaatcaatgtcttcataaatctctaggaactaacaatcatcaaataatcatccaactatgatgattctaacaactagagagcaa 17920691  T
Q  175 acccaaaatatgtatcccaaacaaacacaaagagaagacaaaactacttagataaattatctaaataacta 245  Q
    || | |||||  ||||||||||||||||||| | |||||||||||||||||| ||||||||||| ||||||    
T  17920692 actctaaatagatatcccaaacaaacacaaacaaaagacaaaactacttagaaaaattatctaagtaacta 17920762  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 35905770 - 35905635
Alignment:
Q  66 caaaaaattcaactatcaaaataataattacaatcaatgtcttcttaaatctctaggaat----aaacatcaaaccatcaccaactatggtaattttaac 161  Q
    |||||| ||| ||||||| ||||||  ||||||||||||||||| ||||||||||| ||     || |||||||  ||||||||||||||| ||| ||||    
T  35905770 caaaaacttccactatcacaataatggttacaatcaatgtcttcctaaatctctagaaactgaaaatcatcaaataatcaccaactatggtgattctaac 35905671  T
Q  162 aacaagagagcaaacccaaaatatgtatcccaaaca 197  Q
    ||| ||||||||||||| |||||  |||||||||||    
T  35905670 aaccagagagcaaaccctaaatagatatcccaaaca 35905635  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 2764656 - 2764817
Alignment:
Q  66 caaaaaattcaactatcaaaataataattacaatcaatgtcttcttaaatctctaggaataaaca----tcaaaccatcaccaactatggtaattttaac 161  Q
    |||||| ||| ||||||| ||||||  |||||||||| |||||| ||||||||||||||   |||    |||||  |||||||| |||||| ||| ||||    
T  2764656 caaaaacttccactatcataataatggttacaatcaacgtcttcctaaatctctaggaaccgacagtcatcaaataatcaccaattatggtgattctaac 2764755  T
Q  162 aacaagagagcaaacccaaaatatgtatcccaaacaaacacaaagagaagacaaaactactt 223  Q
    ||| ||||||||||| | ||||| |||| ||||||| |||||||||||||||||||||||||    
T  2764756 aaccagagagcaaactctaaataggtataccaaacagacacaaagagaagacaaaactactt 2764817  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 36966805 - 36966963
Alignment:
Q  101 aatgtcttcttaaatctctaggaat----aaacatcaaaccatcaccaactatggtaattttaacaacaagagagcaaacccaaaatatgtatcccaaac 196  Q
    ||||||||||||||||||||||||     || |||||||  ||||||||||||| | ||| ||||||| |     ||||||| |||||  ||||||||||    
T  36966805 aatgtcttcttaaatctctaggaaccgacaatcatcaaataatcaccaactatgatgattctaacaaccaa----caaaccctaaatagatatcccaaac 36966900  T
Q  197 aaacacaaagagaagacaaaactacttagataaattatctaaataactaaattgataacaaaa 259  Q
    | |||||||||||||||||||||||||||| ||||||||||| || | || | ||||||||||    
T  36966901 agacacaaagagaagacaaaactacttagaaaaattatctaagtatcaaactagataacaaaa 36966963  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 2281535 - 2281442
Alignment:
Q  142 ccaactatggtaattttaacaacaagagagcaaacccaaaatatgtatcccaaacaaacacaaagagaagacaaaactacttagataaattatc 235  Q
    ||||||||| | ||| ||||| | ||||||||||||| ||||| |||||  ||||| ||||||||| ||||| |||||||||||| ||||||||    
T  2281535 ccaactatgatgattctaacagccagagagcaaaccctaaataggtatctgaaacagacacaaagaaaagaccaaactacttagaaaaattatc 2281442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 210
Target Start/End: Complemental strand, 55280429 - 55280281
Alignment:
Q  66 caaaaaattcaactatcaaaataataattacaatcaatgtcttcttaaatctctagga----ataaacatcaaaccatcaccaactatggtaattttaac 161  Q
    |||||| ||| |||| || ||||||  ||||||||||||||||| |||||||||||||    | || |||||||  ||||||||||||||| ||| ||||    
T  55280429 caaaaacttccactaccacaataatggttacaatcaatgtcttcataaatctctaggaactgacaatcatcaaataatcaccaactatggtgattctaac 55280330  T
Q  162 aacaagagagcaaacccaaaatatgtatcccaaacaaacacaaagagaa 210  Q
    ||| | ||| || ||   ||||| ||||||||| || ||||||||||||    
T  55280329 aaccaaagaacagacattaaataggtatcccaaccagacacaaagagaa 55280281  T

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Target: scaffold0047 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 73157 - 73085
Alignment:
Q  166 agagagcaaacccaaaatatgtatcccaaacaaacacaaagagaagacaaaactacttagataaattatctaa 238  Q
    |||||||||| || ||| | |||||||||| | |||||||||||||||||||| | ||||| |||||||||||    
T  73157 agagagcaaatcctaaaaaggtatcccaaatagacacaaagagaagacaaaaccaattagaaaaattatctaa 73085  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 18939735 - 18939629
Alignment:
Q  77 actatcaaaataataattacaatcaatgtcttcttaaatctctaggaat----aaacatcaaaccatcacc-aactatggtaattttaacaacaagagag 171  Q
    ||||||| ||||||  ||||||||||||||||| ||||||||||||||     ||||||||||  |||||| ||||||||| ||| ||||||| || |||    
T  18939735 actatcagaataatggttacaatcaatgtcttcctaaatctctaggaactgacaaacatcaaataatcacccaactatggtgattctaacaaccagggag 18939636  T
Q  172 caaaccc 178  Q
     ||||||    
T  18939635 aaaaccc 18939629  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 40488519 - 40488483
Alignment:
Q  203 aaagagaagacaaaactacttagataaattatctaaa 239  Q
    |||||||||||||||||||||||| ||||||||||||    
T  40488519 aaagagaagacaaaactacttagaaaaattatctaaa 40488483  T

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