View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_87 (Length: 281)
Name: NF3726_high_87
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_87 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 4606325 - 4606585
Alignment:
| Q |
1 |
taaaaataaatgttgtcgcagaaaatgaaaaagaacaacgtactacgcagttgacttctctacttgaacttaattgtcattcagttcaagactcatatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4606325 |
taaaaataaatgttgtcgcagaaaatgaaaaagaacaacgtactacgcagttgacttctctacttgaacttaattgtcattcagttcaaggctcatatgt |
4606424 |
T |
|
| Q |
101 |
ttgaaataataatgagaaattaaaattttagctcctttgtgttgtagtgtgagttcnnnnnnnactcagcgtctgctttttatttgggttccctagttcc |
200 |
Q |
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||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4606425 |
ttgaaatgataatgagaaattaaaatcttagctcc-ttgtgttgtagtgtgagttctttttttactcagcgtctgctttttatttgggttccctagttcc |
4606523 |
T |
|
| Q |
201 |
caaggattcacttgagtgttgagaactttacgacttgtttggacttggaaaaaagtaagttc |
262 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4606524 |
caaggattcacttgagagttgagaactttacgacttgtttggacttggaaaaaagtaagttc |
4606585 |
T |
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