View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_high_89 (Length: 276)

Name: NF3726_high_89
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_high_89
NF3726_high_89
[»] chr7 (21 HSPs)
chr7 (81-206)||(20337416-20337544)
chr7 (95-159)||(1471178-1471242)
chr7 (95-160)||(12645797-12645861)
chr7 (97-162)||(22817060-22817125)
chr7 (100-162)||(32351542-32351604)
chr7 (95-160)||(7817756-7817820)
chr7 (95-160)||(35627907-35627972)
chr7 (97-162)||(38656657-38656722)
chr7 (113-161)||(25200200-25200248)
chr7 (95-159)||(35600791-35600855)
chr7 (95-155)||(40417893-40417953)
chr7 (112-159)||(6253320-6253367)
chr7 (95-162)||(11352859-11352925)
chr7 (95-162)||(23034391-23034457)
chr7 (95-166)||(47356103-47356174)
chr7 (95-161)||(46022153-46022219)
chr7 (103-164)||(1284541-1284602)
chr7 (95-164)||(39497184-39497253)
chr7 (107-155)||(39110994-39111042)
chr7 (95-155)||(42553017-42553077)
chr7 (95-155)||(46725725-46725785)
[»] chr1 (25 HSPs)
chr1 (97-158)||(31433611-31433672)
chr1 (95-158)||(29706592-29706655)
chr1 (95-160)||(11597756-11597821)
chr1 (95-160)||(27357613-27357678)
chr1 (95-164)||(44517844-44517913)
chr1 (98-161)||(1820992-1821055)
chr1 (98-161)||(37610671-37610734)
chr1 (95-161)||(6949866-6949932)
chr1 (95-159)||(10889934-10889997)
chr1 (95-159)||(13489782-13489845)
chr1 (95-155)||(31975110-31975169)
chr1 (121-156)||(4862311-4862346)
chr1 (95-162)||(29154898-29154964)
chr1 (95-158)||(32158685-32158748)
chr1 (95-154)||(33358051-33358109)
chr1 (116-158)||(41451768-41451810)
chr1 (97-159)||(46281558-46281620)
chr1 (95-155)||(12127983-12128044)
chr1 (118-159)||(32266228-32266269)
chr1 (95-160)||(50328028-50328092)
chr1 (95-160)||(50824861-50824925)
chr1 (101-153)||(16063512-16063564)
chr1 (95-155)||(19947636-19947696)
chr1 (98-158)||(50239053-50239113)
chr1 (95-155)||(51571238-51571298)
[»] chr8 (17 HSPs)
chr8 (97-161)||(24795370-24795434)
chr8 (98-162)||(6445302-6445366)
chr8 (95-162)||(37754681-37754748)
chr8 (95-162)||(40517377-40517444)
chr8 (95-153)||(6182347-6182405)
chr8 (97-159)||(10644689-10644751)
chr8 (112-157)||(2621917-2621962)
chr8 (95-160)||(36969561-36969626)
chr8 (95-154)||(14707236-14707294)
chr8 (98-161)||(25018490-25018553)
chr8 (95-153)||(144150-144208)
chr8 (95-161)||(36885374-36885439)
chr8 (95-156)||(39465614-39465675)
chr8 (95-155)||(2455165-2455225)
chr8 (117-161)||(14863264-14863308)
chr8 (103-159)||(22811405-22811461)
chr8 (95-159)||(30439394-30439457)
[»] chr2 (32 HSPs)
chr2 (95-155)||(20532354-20532414)
chr2 (95-162)||(44050134-44050201)
chr2 (95-159)||(3412442-3412506)
chr2 (95-155)||(44977391-44977451)
chr2 (102-162)||(5054057-5054117)
chr2 (95-159)||(9521927-9521991)
chr2 (95-159)||(14255422-14255486)
chr2 (95-162)||(23352792-23352858)
chr2 (95-162)||(31296657-31296724)
chr2 (95-154)||(44254721-44254779)
chr2 (97-159)||(34134658-34134720)
chr2 (95-163)||(1863775-1863841)
chr2 (95-159)||(32344616-32344680)
chr2 (98-162)||(36436690-36436753)
chr2 (95-167)||(37105758-37105828)
chr2 (107-162)||(3012737-3012792)
chr2 (98-165)||(13765523-13765589)
chr2 (95-154)||(42430769-42430828)
chr2 (95-161)||(3097747-3097813)
chr2 (95-161)||(13333056-13333122)
chr2 (98-156)||(16199603-16199661)
chr2 (95-160)||(1907650-1907715)
chr2 (95-160)||(5032043-5032108)
chr2 (95-156)||(14890979-14891040)
chr2 (119-164)||(30220688-30220733)
chr2 (98-155)||(30339756-30339813)
chr2 (95-156)||(36625207-36625268)
chr2 (98-155)||(39147888-39147945)
chr2 (95-160)||(43520977-43521042)
chr2 (95-155)||(28494979-28495039)
chr2 (95-159)||(36643972-36644035)
chr2 (95-155)||(41056639-41056699)
[»] chr4 (39 HSPs)
chr4 (95-162)||(27371260-27371327)
chr4 (95-160)||(19174661-19174726)
chr4 (95-162)||(1627440-1627510)
chr4 (95-151)||(24990234-24990290)
chr4 (125-164)||(6520716-6520755)
chr4 (95-161)||(34616680-34616746)
chr4 (95-161)||(39654943-39655009)
chr4 (97-159)||(42815526-42815588)
chr4 (95-160)||(336694-336759)
chr4 (95-164)||(515528-515597)
chr4 (97-162)||(32696673-32696738)
chr4 (95-160)||(50831642-50831707)
chr4 (97-161)||(53796777-53796841)
chr4 (125-160)||(12375864-12375899)
chr4 (95-162)||(17683461-17683527)
chr4 (95-162)||(18767979-18768046)
chr4 (98-164)||(33423461-33423527)
chr4 (95-162)||(35936085-35936152)
chr4 (116-155)||(52431018-52431057)
chr4 (95-161)||(24509273-24509339)
chr4 (98-156)||(26148093-26148151)
chr4 (95-161)||(38382440-38382506)
chr4 (95-153)||(45143567-45143624)
chr4 (95-153)||(45152336-45152393)
chr4 (95-161)||(47181960-47182026)
chr4 (95-161)||(48402083-48402149)
chr4 (98-155)||(1797713-1797770)
chr4 (97-162)||(3078792-3078857)
chr4 (97-162)||(12595515-12595580)
chr4 (95-156)||(14603576-14603637)
chr4 (124-157)||(17367215-17367248)
chr4 (95-160)||(22819769-22819833)
chr4 (95-152)||(23662211-23662268)
chr4 (95-160)||(33093003-33093068)
chr4 (95-164)||(42491193-42491262)
chr4 (95-155)||(46038782-46038840)
chr4 (90-170)||(47744389-47744470)
chr4 (95-159)||(43769831-43769894)
chr4 (120-164)||(52895401-52895445)
[»] chr6 (20 HSPs)
chr6 (98-150)||(34084526-34084578)
chr6 (95-169)||(25127708-25127782)
chr6 (95-155)||(3552047-3552107)
chr6 (95-155)||(30945933-30945993)
chr6 (95-159)||(30956191-30956255)
chr6 (95-160)||(33019039-33019104)
chr6 (95-159)||(3832583-3832646)
chr6 (95-163)||(26595468-26595536)
chr6 (95-161)||(4820486-4820552)
chr6 (95-161)||(16199569-16199635)
chr6 (95-153)||(30621859-30621917)
chr6 (95-161)||(31883189-31883255)
chr6 (98-160)||(33656893-33656955)
chr6 (95-164)||(10826622-10826691)
chr6 (95-160)||(18141188-18141252)
chr6 (95-155)||(2159197-2159257)
chr6 (95-163)||(6531064-6531131)
chr6 (95-159)||(13143270-13143333)
chr6 (95-155)||(29639203-29639263)
chr6 (95-155)||(29642933-29642993)
[»] chr5 (17 HSPs)
chr5 (95-161)||(24405841-24405907)
chr5 (95-159)||(27546185-27546249)
chr5 (97-161)||(18695440-18695504)
chr5 (97-159)||(6940037-6940099)
chr5 (95-161)||(41175592-41175657)
chr5 (96-152)||(1293013-1293069)
chr5 (97-161)||(9939317-9939381)
chr5 (95-162)||(10649555-10649621)
chr5 (95-154)||(15952938-15952996)
chr5 (95-162)||(33655298-33655365)
chr5 (95-161)||(17626105-17626171)
chr5 (95-160)||(19839873-19839937)
chr5 (95-160)||(34546535-34546600)
chr5 (95-160)||(43441858-43441922)
chr5 (95-159)||(8675321-8675384)
chr5 (95-163)||(21353263-21353331)
chr5 (95-159)||(36321684-36321748)
[»] chr3 (34 HSPs)
chr3 (95-160)||(52564536-52564601)
chr3 (95-155)||(34627773-34627833)
chr3 (95-163)||(46965984-46966052)
chr3 (102-153)||(11075270-11075321)
chr3 (95-169)||(819091-819165)
chr3 (102-155)||(11056825-11056878)
chr3 (95-156)||(27511844-27511904)
chr3 (95-160)||(54007581-54007646)
chr3 (95-163)||(46965893-46965961)
chr3 (97-159)||(29030694-29030756)
chr3 (95-160)||(55361120-55361185)
chr3 (95-155)||(12762581-12762641)
chr3 (95-151)||(26645146-26645201)
chr3 (95-154)||(6093771-6093830)
chr3 (103-162)||(6178310-6178369)
chr3 (102-161)||(33256435-33256494)
chr3 (95-154)||(39697115-39697173)
chr3 (102-161)||(45205403-45205462)
chr3 (95-162)||(51465799-51465865)
chr3 (107-161)||(6999301-6999355)
chr3 (95-160)||(9158759-9158824)
chr3 (101-155)||(9719340-9719394)
chr3 (95-161)||(21217631-21217697)
chr3 (95-161)||(37056943-37057009)
chr3 (95-164)||(13348017-13348086)
chr3 (97-162)||(29573240-29573305)
chr3 (95-159)||(36412243-36412307)
chr3 (95-155)||(45754758-45754819)
chr3 (95-155)||(23155330-23155390)
chr3 (95-155)||(23592577-23592637)
chr3 (95-155)||(23600712-23600772)
chr3 (103-155)||(38523294-38523346)
chr3 (95-155)||(42889104-42889164)
chr3 (95-159)||(46965806-46965870)
[»] scaffold0141 (1 HSPs)
scaffold0141 (95-161)||(12052-12117)
[»] scaffold0095 (1 HSPs)
scaffold0095 (95-156)||(22826-22887)
[»] scaffold0005 (1 HSPs)
scaffold0005 (95-156)||(213741-213802)
[»] scaffold0002 (1 HSPs)
scaffold0002 (102-163)||(469520-469581)
[»] scaffold0026 (1 HSPs)
scaffold0026 (166-198)||(101731-101763)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 81 - 206
Target Start/End: Original strand, 20337416 - 20337544
Alignment:
Q  81 gtcaacacgcattgttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt---aagaaaaagtagaaa 177  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||||||| |    
T  20337416 gtcaacactcattgttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaaaaaaaaaaagtagaga 20337515  T
Q  178 aagaaaagaattaaataatattcactttt 206  Q
    |||||||||||||||||||||||||||||    
T  20337516 aagaaaagaattaaataatattcactttt 20337544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 1471242 - 1471178
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||||||||||| ||  ||||||||||   |||||||||||||||||||||||||||    
T  1471242 ttctttgtaaatttatggttgtcaaataagttgtctatcaaatagttgttcaaataacacacctc 1471178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 12645861 - 12645797
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||| |||||||||||| |||||||||  |||||||||||||||||| ||| |||||    
T  12645861 ttctttgtaaatt-atggttatctcaaaagttgtcaaccaaatagttgttcaaatatcactcctct 12645797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 22817060 - 22817125
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||  |||||||| || |||||||||| ||| | ||||||||||||||||||||||||    
T  22817060 ctttgtaaattagtggttatcacaaaagttgtcattcaattggttgttcaaataacacacctcttt 22817125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 32351604 - 32351542
Alignment:
Q  100 tgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||||||  ||||||||||||||||||||| || |||||| ||| ||| ||||||    
T  32351604 tgtaaatttatggttgactcataagttgtcatacaaatggtagttcaattaatacaactcttt 32351542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 7817756 - 7817820
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| |||||||||||||||| |||||    
T  7817756 ttctttgtaaatt-atggttgtcacataagttgtcaaccaaatggttgttcaaataacactcctct 7817820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 35627972 - 35627907
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    |||||| |||| |||||||||||||| ||||| |||  || |||||||||||||||||||| ||||    
T  35627972 ttctttataaaattatggttatctcaaaagttatcaatcagatagttgttcaaataacacaactct 35627907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 38656657 - 38656722
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    ||||||||||| |||||| || || ||||| |||| ||| | ||||||||||||||||||||||||    
T  38656657 ctttgtaaattaatggttctcacaaaagttatcattcaattggttgttcaaataacacacctcttt 38656722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 25200248 - 25200200
Alignment:
Q  113 ttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    ||||| |||||||||| |  |||||||||||||||||||||||||||||    
T  25200248 ttatcacataagttgttaagcaaatagttgttcaaataacacacctctt 25200200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 35600791 - 35600855
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||||  ||||| || || |||||||||  ||||| |||||||||||||||||||||    
T  35600791 ttctttgtaaattagtggttgtcacaaaagttgtcactcaaatggttgttcaaataacacacctc 35600855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 40417893 - 40417953
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||||||||| || ||||| ||||| |||||||| || |||||| |||||||||||||||    
T  40417893 ttctttgtaaaattttggttgtctcaaaagttgtcgtataaatagatgttcaaataacaca 40417953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 6253320 - 6253367
Alignment:
Q  112 gttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||||||||||| ||||| ||||| ||||||| |||||||    
T  6253320 gttatctcataagttgtcatgcaaatggttgtccaaataatacacctc 6253367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 11352925 - 11352859
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||||    
T  11352925 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 11352859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 23034391 - 23034457
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||||||||||| || |  ||||||||| |||||| |||||||||||| | |||||||||    
T  23034391 ttctttgtaaatttatggttgtc-ctgaagttgtcacacaaatggttgttcaaatagcccacctcttt 23034457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 47356103 - 47356174
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaaga 166  Q
    |||||| |||||  |||||| || | ||||||||||||||||| |||||| |||||||||| ||||| ||||    
T  47356103 ttctttataaatcaatggttgtcccgtaagttgtcatacaaatggttgttaaaataacacaactcttaaaga 47356174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 46022219 - 46022153
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  46022219 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 46022153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 1284541 - 1284602
Alignment:
Q  103 aaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 164  Q
    ||||||||| || | ||| ||||| ||||| |||| ||||||||||||||||| ||||||||    
T  1284541 aaatttatgattgtatcaaaagttatcataaaaatggttgttcaaataacacaactctttaa 1284602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 39497253 - 39497184
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 164  Q
    ||||||||| ||| |||||| ||| ||||||| ||||  |||| ||||||||||||||||| ||| ||||    
T  39497253 ttctttgtacattaatggttgtcttataagttatcattgaaatggttgttcaaataacacaactcattaa 39497184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 39110994 - 39111042
Alignment:
Q  107 ttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||| || ||||||||||||||||  ||||| ||||||||||||||||    
T  39110994 ttatgattgtctcataagttgtcattaaaataattgttcaaataacaca 39111042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 42553017 - 42553077
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||||||||| |||||||| ||||| ||||| |||   |||| |||||||||||||||||    
T  42553017 ttctttgtaaaattatggttttctcaaaagttatcaattaaatggttgttcaaataacaca 42553077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 46725725 - 46725785
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||||||||| ||  ||| |||||||||||||||   |||||||| |||||||||||||    
T  46725725 ttctttgtaaatctaaagttgtctcataagttgtcaacaaaatagttattcaaataacaca 46725785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 31433611 - 31433672
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacct 158  Q
    |||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  31433611 ctttgtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataacacacct 31433672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 29706655 - 29706592
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacct 158  Q
    |||||||||||||||||||||||| | ||||||||| | ||||  |||||||||||||||||||    
T  29706655 ttctttgtaaatttatggttatcttaaaagttgtcacagaaatgattgttcaaataacacacct 29706592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 11597756 - 11597821
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    |||||||||||| ||||||| || ||||||||||||  ||||| | ||||||||||||||||||||    
T  11597756 ttctttgtaaatctatggttgtcccataagttgtcaagcaaatggatgttcaaataacacacctct 11597821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 27357613 - 27357678
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||||||| || | ||| ||||||||| ||||||| || ||||||||||||||||||    
T  27357613 ttctttgtaaatttatgattgtatcaaaagttgtcacacaaatatttattcaaataacacacctct 27357678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 44517913 - 44517844
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 164  Q
    |||||||||||||||| |||||| || ||||| ||| || ||| ||||||||||||||||| ||||||||    
T  44517913 ttctttgtaaatttatagttatcccaaaagttatcacacgaatggttgttcaaataacacaactctttaa 44517844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 1821055 - 1820992
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    ||||||||| |||| || || |||||||||||||||||| | |||||||||| |||||||||||    
T  1821055 tttgtaaatctatgattgtcacataagttgtcatacaaacaattgttcaaatcacacacctctt 1820992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 37610734 - 37610671
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||||||||||||||  ||||||| |||||||| |||| ||| ||||||||||||| |||||    
T  37610734 tttgtaaatttatggttggctcataaattgtcatataaattgttattcaaataacacaactctt 37610671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 6949932 - 6949866
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||| |||||||||  |||||  | ||||||||| ||||||||||||||| ||||||||||||||    
T  6949932 ttctttataaatttatatttatcgtaaaagttgtcacacaaatagttgttcagataacacacctctt 6949866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 10889997 - 10889934
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    ||||||||||||| |||||| || || |||||||||  |||||||||||||||||||||| ||||    
T  10889997 ttctttgtaaatt-atggttgtcacaaaagttgtcaaccaaatagttgttcaaataacactcctc 10889934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 13489782 - 13489845
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    ||||||||||||| |||||| || || |||||||||  |||||||||||||||||||||| ||||    
T  13489782 ttctttgtaaatt-atggttgtcccagaagttgtcaaccaaatagttgttcaaataacactcctc 13489845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 31975110 - 31975169
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||||||||| ||| ||| ||| ||||||| ||||| ||||||||||||||||||||||    
T  31975110 ttctttgtaaatctatagttgtcttataagttatcata-aaatagttgttcaaataacaca 31975169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 4862346 - 4862311
Alignment:
Q  121 taagttgtcatacaaatagttgttcaaataacacac 156  Q
    |||||||||||| |||||||||||||||||||||||    
T  4862346 taagttgtcatataaatagttgttcaaataacacac 4862311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 29154898 - 29154964
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    ||||||||||||| || ||| || ||||||||||||  ||||| |||||||||||||||| |||||||    
T  29154898 ttctttgtaaatt-atcgttgtcccataagttgtcaaccaaatggttgttcaaataacactcctcttt 29154964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 32158748 - 32158685
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacct 158  Q
    ||||||||||||||||| || | || ||||||||||| |||||  | |||||||||||||||||    
T  32158748 ttctttgtaaatttatgattgtttcgtaagttgtcatgcaaatgatcgttcaaataacacacct 32158685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 33358109 - 33358051
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 154  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| ||||||||||||||||    
T  33358109 ttctttgtaaatt-atggttgtcacataagttgtcaaccaaatggttgttcaaataacac 33358051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 41451768 - 41451810
Alignment:
Q  116 tctcataagttgtcatacaaatagttgttcaaataacacacct 158  Q
    |||| |||||||||||| |||| ||||||||||||||||||||    
T  41451768 tctcgtaagttgtcatataaatggttgttcaaataacacacct 41451810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 46281558 - 46281620
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||||||||| ||  ||| ||||||   ||||| |||||||||||||||||||||    
T  46281558 ctttgtaaatttatggttgtcaaatatgttgtctatcaaatggttgttcaaataacacacctc 46281620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 12127983 - 12128044
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtca-tacaaatagttgttcaaataacaca 155  Q
    ||||||| |||| ||||||| || |||||||| ||| ||||||| |||||||||||||||||    
T  12127983 ttctttggaaatctatggttgtcccataagttatcaatacaaatggttgttcaaataacaca 12128044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 32266269 - 32266228
Alignment:
Q  118 tcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    ||||||| |||||| ||||||||||||||||||| |||||||    
T  32266269 tcataaggtgtcatgcaaatagttgttcaaataagacacctc 32266228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 50328092 - 50328028
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||    
T  50328092 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctct 50328028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 50824861 - 50824925
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||| |||||| | ||||||||||||   ||||| |||||||||||||||| |||||    
T  50824861 ttctttgtaaatt-atggttgtatcataagttgtccaccaaatggttgttcaaataacactcctct 50824925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 16063564 - 16063512
Alignment:
Q  101 gtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 153  Q
    |||||||||||||| || || || || ||| ||||||||||||||||||||||    
T  16063564 gtaaatttatggttgtcccaaaaattatcacacaaatagttgttcaaataaca 16063512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 19947696 - 19947636
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||||  |||||||||||||||    
T  19947696 ttctttataaaattttggttgtctcaaaagttgtcatataaataaatgttcaaataacaca 19947636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 50239113 - 50239053
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacct 158  Q
    ||||||||||  ||||| || || |||||||||  ||||| ||||||||||||||||||||    
T  50239113 tttgtaaattagtggttgtcacaaaagttgtcactcaaatggttgttcaaataacacacct 50239053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 51571298 - 51571238
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||||||||| |||||||| || || || ||||||  ||||| |||||||||||||||||    
T  51571298 ttctttgtaaaattatggttgtcccaaaaattgtcaatcaaatggttgttcaaataacaca 51571238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 24795370 - 24795434
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||    
T  24795370 ctttataaatttatggttgtctcataagttgtcaaacaaatagttgttcaaataacatacctctt 24795434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 6445302 - 6445366
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    ||||||||||||||||| || ||||||||||||  ||||| || |||||||||||||| ||||||    
T  6445302 tttgtaaatttatggttgtcccataagttgtcaatcaaatggtcgttcaaataacacatctcttt 6445366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 37754681 - 37754748
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||||||  ||| |  || |||||||||||||||| |||||| |||||||||||||||||    
T  37754681 ttctttgtaaatttaaagttgttccaaaagttgtcatacaaatggttgtttaaataacacacctcttt 37754748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 40517377 - 40517444
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||||||||||| ||| ||||| ||||||| ||||  |||||||||||| |||| |||||    
T  40517377 ttctttgtaaatttatggttgtcttataagatgtcataaaaatgattgttcaaataatacacatcttt 40517444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 6182347 - 6182405
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 153  Q
    |||||| ||||||||| ||| ||  |||| |||||||||||||||||||||||||||||    
T  6182347 ttctttataaatttattgttgtccaataaattgtcatacaaatagttgttcaaataaca 6182405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 10644751 - 10644689
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||||||||| ||  ||||||||||   ||||| |||||||||||||||||||||    
T  10644751 ctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctc 10644689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 2621917 - 2621962
Alignment:
Q  112 gttatctcataagttgtcatacaaatagttgttcaaataacacacc 157  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||    
T  2621917 gttacctcataagttgtcatacaaatgattgttcaaataacacacc 2621962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 36969626 - 36969561
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    |||||||||||  ||||||| || |||||||||||| |||||| | ||||||||||||||| ||||    
T  36969626 ttctttgtaaaaatatggttgtcgcataagttgtcaaacaaatggatgttcaaataacacaactct 36969561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 14707294 - 14707236
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 154  Q
    ||||||||||||| ||| || ||||||||||||||   ||||||||||||||||||||||    
T  14707294 ttctttgtaaatt-atgattgtctcataagttgtccaccaaatagttgttcaaataacac 14707236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 25018490 - 25018553
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||||||||||| || ||  |||| ||||| |||||||| ||||||||||||||||| ||||    
T  25018490 tttgtaaatttatgattgtcatataaattgtcttacaaataattgttcaaataacacacatctt 25018553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 144208 - 144150
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 153  Q
    ||||||||||||||||||||||| || || || ||||| |||| |||||| ||||||||    
T  144208 ttctttgtaaatttatggttatcacaaaaattatcatagaaatggttgttgaaataaca 144150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 36885439 - 36885374
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    ||||||||||||| |||||| || |||||||||||   ||||| |||||||||||||||| ||||||    
T  36885439 ttctttgtaaatt-atggttgtcccataagttgtccaccaaatggttgttcaaataacactcctctt 36885374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 39465614 - 39465675
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 156  Q
    |||||| ||| ||||||||| | ||| ||||||||  | |||||||||||||||||||||||    
T  39465614 ttctttataattttatggttgtttcaaaagttgtctcataaatagttgttcaaataacacac 39465675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 2455165 - 2455225
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||||| || ||||||  ||||  |||| ||||||||||||| |||||||||||||||||    
T  2455165 ttctttgaaattttatgagtatccaataaattgtcatacaaattgttgttcaaataacaca 2455225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 14863264 - 14863308
Alignment:
Q  117 ctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||| ||||||||  |||||| |||||||||||||||||||||||    
T  14863264 ctcaaaagttgtcccacaaatggttgttcaaataacacacctctt 14863308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 22811461 - 22811405
Alignment:
Q  103 aaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||| ||| | | ||||||||||||||  ||||| ||||||||||||||    
T  22811461 aaatttatggttgtcttaaaggttgtcatacaaattattgtttaaataacacacctc 22811405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 30439457 - 30439394
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    ||||||||||||| |||||| || |||||||| |||  ||||| |||||||||||||||| ||||    
T  30439457 ttctttgtaaatt-atggttgtcacataagttatcaaccaaatggttgttcaaataacactcctc 30439394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 20532414 - 20532354
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  20532414 ttctttataaatttatggttatcccataagttatcatacaaatagttgttcaaataacaca 20532354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 44050134 - 44050201
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||||||||||| ||||| ||||||||  |||||| ||||||||||||||||||||||||    
T  44050134 ttctttgtaaatttatggttgtctcaaaagttgtcgcacaaatggttgttcaaataacacacctcttt 44050201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 3412506 - 3412442
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||||||||||| | ||| ||||||||| | ||||||||||||||| ||||||||||    
T  3412506 ttctttgtaaatttatggttgtttcaaaagttgtcacataaatagttgttcaaacaacacacctc 3412442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 44977451 - 44977391
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||||||||||||||||| ||||||||||| || | ||||| |||||||||||||||||    
T  44977451 ttctttgtaaatttatggttgtctcataagttttcgttcaaatggttgttcaaataacaca 44977391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 5054117 - 5054057
Alignment:
Q  102 taaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    ||||||||||||| ||||| ||||||||||| |||||||| || |||||||||| ||||||    
T  5054117 taaatttatggttgtctcaaaagttgtcatataaatagttttttaaataacacaactcttt 5054057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 9521927 - 9521991
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||||||||||| ||||| ||||| ||| |||||||  | |||||||||||||||||    
T  9521927 ttctttgtaaatttatggttgtctcaaaagttatcacacaaataaatattcaaataacacacctc 9521991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 14255422 - 14255486
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||||||||||| || || ||||||||  | |||| |||||||||||||||||||||    
T  14255422 ttctttgtaaatttatggttgtcccaaaagttgtcgcataaatggttgttcaaataacacacctc 14255486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 23352858 - 23352792
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| |||||||||||||||| |||||||    
T  23352858 ttctttgtaaatt-atggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctcttt 23352792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 31296657 - 31296724
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||||||||||| ||  | ||||||||| || ||| ||||||||||||||||| ||||||    
T  31296657 ttctttgtaaatttatggttgtcataaaagttgtcacactaatggttgttcaaataacacatctcttt 31296724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 44254721 - 44254779
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 154  Q
    ||||||||||||| ||||||||| ||||||||||||  ||||| ||||||||||||||||    
T  44254721 ttctttgtaaatt-atggttatcccataagttgtcaatcaaatggttgttcaaataacac 44254779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 34134720 - 34134658
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||||||||| ||  ||||||||||   ||||| |||||||||||||||||||||    
T  34134720 ctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctc 34134658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 1863775 - 1863841
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttta 163  Q
    |||||||||||||||||||| ||||| |||||| |  |||||| |||||||||  ||||||||||||||    
T  1863775 ttctttgtaaatttatggttgtctcaaaagttgcc--acaaatggttgttcaagcaacacacctcttta 1863841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 32344616 - 32344680
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    ||||||||||||||||||||||   | || |||||| |||||||  |||||||||||||||||||    
T  32344616 ttctttgtaaatttatggttattctaaaaattgtcacacaaataactgttcaaataacacacctc 32344680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 36436753 - 36436690
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||||||||||  ||||||||||| ||||||| | ||||||||||| ||| ||||||    
T  36436753 tttgtaaatttatggttataccataagttgtcttacaaattg-tgttcaaataatacaactcttt 36436690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 37105758 - 37105828
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaagaa 167  Q
    ||||||||||||| |||||| || || |||||||||  |||||||||||||||||||||| ||| ||||||||    
T  37105758 ttctttgtaaatt-atggttgtcacaaaagttgtcaaccaaatagttgttcaaataacactcct-tttaagaa 37105828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 3012792 - 3012737
Alignment:
Q  107 ttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||| || ||||||||||||  ||||| |||||||||||||||| |||||||    
T  3012792 ttatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctcttt 3012737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 13765523 - 13765589
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaag 165  Q
    |||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| ||||||||||    
T  13765523 tttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctctttaag 13765589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 42430769 - 42430828
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 154  Q
    ||||||||||| |||||||| |  || ||||||||| |||||| ||||||||||||||||    
T  42430769 ttctttgtaaacttatggttgttccaaaagttgtcacacaaatggttgttcaaataacac 42430828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 3097813 - 3097747
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  3097813 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 3097747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 13333122 - 13333056
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  13333122 ttctttataaaattttggttgtctcaaaagttgtcatataaatcgatgttcaaataacacaactctt 13333056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 16199661 - 16199603
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 156  Q
    ||||||||||||||||| |  ||||| || ||||||||||| || ||||||||||||||    
T  16199661 tttgtaaatttatggttgtaccataaattatcatacaaataattattcaaataacacac 16199603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 1907715 - 1907650
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    |||||||||||||||||||| ||  | ||||||||||  ||||  |||||||||||||||| ||||    
T  1907715 ttctttgtaaatttatggttgtcatacaagttgtcatctaaatgattgttcaaataacacaactct 1907650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 5032043 - 5032108
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    |||||||||||||||||||| ||  ||||||||||   ||||  ||||||||||||||||| ||||    
T  5032043 ttctttgtaaatttatggttgtcaaataagttgtctatcaaaaggttgttcaaataacacatctct 5032108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 14891040 - 14890979
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 156  Q
    |||||||||||| ||||||| |  |||||||||| |  ||||| ||||||||||||||||||    
T  14891040 ttctttgtaaatctatggttgttccataagttgttaatcaaatggttgttcaaataacacac 14890979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 30220733 - 30220688
Alignment:
Q  119 cataagttgtcatacaaatagttgttcaaataacacacctctttaa 164  Q
    ||||||||||| || ||||||| |||||||||||| ||||||||||    
T  30220733 cataagttgtcctaaaaatagtggttcaaataacatacctctttaa 30220688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 30339813 - 30339756
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||| |||||||| || ||||||||||| ||||  |||| |||||||||||||||||    
T  30339813 tttgttaatttatgattgtctcataagttctcatttaaatggttgttcaaataacaca 30339756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 36625207 - 36625268
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 156  Q
    |||| ||||||||||||||| ||| | |  |||||||||||||| || ||||||||||||||    
T  36625207 ttctctgtaaatttatggttgtcttaaatattgtcatacaaataattattcaaataacacac 36625268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 39147888 - 39147945
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||||||||||| || || || ||||||||||  |||| |||||||||||||||||    
T  39147888 tttgtaaatttatgattgtcccaaaagttgtcattaaaatggttgttcaaataacaca 39147945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 43520977 - 43521042
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||| |||||| ||| ||| ||||||||  ||||  |||||||||||||| ||||||    
T  43520977 ttctttgtaaattgatggttgtcttataggttgtcatgtaaatgattgttcaaataacatacctct 43521042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 28494979 - 28495039
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||| ||||||||||||||| || || ||||||| ||  |||| |||||||||||||||||    
T  28494979 ttctgtgtaaatttatggttgtcacaaaagttgtaatttaaatggttgttcaaataacaca 28495039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 36644035 - 36643972
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    ||||||||||||| |||||| || ||||| ||||||  ||||| |||||||||||||||| ||||    
T  36644035 ttctttgtaaatt-atggttgtcccataaattgtcaaccaaatggttgttcaaataacactcctc 36643972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 41056699 - 41056639
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | |||||||||||||||    
T  41056699 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacaca 41056639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 27371260 - 27371327
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||||||||||| ||||||||||| ||| | |||| ||||||||||||||||||||||||    
T  27371260 ttctttgtaaatttatggttgtctcataagttctcaaataaattgttgttcaaataacacacctcttt 27371327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 19174726 - 19174661
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||||||| || ||||| ||||||||| |||| | ||||||||||||||||| ||||    
T  19174726 ttctttgtaaatttatgtttgtctcaaaagttgtcacacaattggttgttcaaataacacatctct 19174661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 1627510 - 1627440
Alignment:
Q  95 ttctttgtaaatttatggttatctcat---aagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||||||||||| || ||    |||||||||| ||||||||||||||||||||||| ||||||    
T  1627510 ttctttgtaaatttatggttgtcacaacaaaagttgtcatccaaatagttgttcaaataacacaactcttt 1627440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 24990234 - 24990290
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataa 151  Q
    |||||||||||||||||||| || |||||||||||||||||||  || |||||||||    
T  24990234 ttctttgtaaatttatggttgtcccataagttgtcatacaaatgattattcaaataa 24990290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 6520755 - 6520716
Alignment:
Q  125 ttgtcatacaaatagttgttcaaataacacacctctttaa 164  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  6520755 ttgtcatacaaatggttgttcaaataacacacctctttaa 6520716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 34616680 - 34616746
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||||| ||||||||||||||| |||||    
T  34616680 ttctttataaaattttggttgtctcaaaagttgtcatataaatagatgttcaaataacacaactctt 34616746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 39654943 - 39655009
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||||||||||||||||| ||| | || || ||||  |||||||||||||||||||||| |||||    
T  39654943 ttctttgtaaatttatggttgtcttaaaaattatcatctaaatagttgttcaaataacacaactctt 39655009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 42815526 - 42815588
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||||||||| ||  ||||||||||   ||||| |||||||||||||||||||||    
T  42815526 ctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctc 42815588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 336759 - 336694
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||| ||||| |||||| | ||| ||||||||||| ||| |||||||||||||||||| ||||    
T  336759 ttctttgcaaattaatggttgtatcaaaagttgtcataaaaaaagttgttcaaataacacaactct 336694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 515597 - 515528
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 164  Q
    |||||| |||||||||| |||| ||| ||||||||||| |||||  | ||||||||||||| ||||||||    
T  515597 ttctttataaatttatgattatttcaaaagttgtcatataaataaatattcaaataacacaactctttaa 515528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 32696738 - 32696673
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||||||||| |   |||| ||||||  ||||| ||||||||||||||||||||||||    
T  32696738 ctttgtaaatttatggttgtacaataaattgtcaaccaaatggttgttcaaataacacacctcttt 32696673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 50831707 - 50831642
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||| |||||||| || || |||||||||  ||||| ||||||||||||||||| ||||    
T  50831707 ttctttgtaaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactct 50831642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 53796777 - 53796841
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||||||||  ||||| || || |||||||||| ||| ||||||||||||||||||| |||||    
T  53796777 ctttgtaaattagtggttgtcacaaaagttgtcattcaattagttgttcaaataacacagctctt 53796841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 160
Target Start/End: Complemental strand, 12375899 - 12375864
Alignment:
Q  125 ttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||| ||||||||||||||||||||||    
T  12375899 ttgtcatacaaatggttgttcaaataacacacctct 12375864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 17683461 - 17683527
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||||    
T  17683461 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 17683527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 18767979 - 18768046
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||| ||||||||||||| ||| | ||||| ||| ||||||| ||||| ||||||||||| |||||    
T  18767979 ttctttataaatttatggttgtcttaaaagttatcacacaaataattgtttaaataacacacatcttt 18768046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 33423461 - 33423527
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgt-catacaaatagttgttcaaataacacacctctttaa 164  Q
    ||||||||||||||||||||  ||||||||| |||| |||| ||||| ||||||||||| ||||||||    
T  33423461 tttgtaaatttatggttatcaaataagttgtccata-aaatggttgtgcaaataacacatctctttaa 33423527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 35936085 - 35936152
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||| ||| ||||||| ||  | ||||||||| ||||||  |||||||||||||||||||||||    
T  35936085 ttctttgtgaatgtatggttgtcctaaaagttgtcacacaaatgattgttcaaataacacacctcttt 35936152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 52431018 - 52431057
Alignment:
Q  116 tctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  52431018 tctcataggttgtcatacaaatggttgttcaaataacaca 52431057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 24509339 - 24509273
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||||||||||  ||||| || || || || |||  |||||||||||||||||||||||||||||    
T  24509339 ttctttgtaaattagtggttgtcacaaaaattatcactcaaatagttgttcaaataacacacctctt 24509273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 26148151 - 26148093
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 156  Q
    ||||||||| ||||||| | | ||||||||| |||||||| ||||||||||||| ||||    
T  26148151 tttgtaaatctatggttgttttataagttgttatacaaatggttgttcaaataaaacac 26148093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 38382440 - 38382506
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  38382440 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 38382506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 45143624 - 45143567
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 153  Q
    ||||||||||||| |||||| || || |||||||||  |||||||||||||||||||||    
T  45143624 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatagttgttcaaataaca 45143567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 45152393 - 45152336
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 153  Q
    ||||||||||||| |||||| || || |||||||||  |||||||||||||||||||||    
T  45152393 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatagttgttcaaataaca 45152336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 47181960 - 47182026
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  47181960 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 47182026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 48402149 - 48402083
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  48402149 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 48402083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 1797770 - 1797713
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||||||| |||| || |||| ||||||||||| ||||| || ||||||||||||||    
T  1797770 tttgtaaatctatgattgtctcgtaagttgtcattcaaatggtagttcaaataacaca 1797713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 3078857 - 3078792
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||||||||| ||  ||||||||||   |||||  |||||||||||| ||||||||||    
T  3078857 ctttgtaaatttatggttgtcaaataagttgtctatcaaatgattgttcaaataagacacctcttt 3078792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 12595580 - 12595515
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||| ||||||||||||| || || || |||||||  |||| ||||||||||||||||| ||||||    
T  12595580 ctttataaatttatggttgtcccaaaaattgtcatcaaaatggttgttcaaataacacatctcttt 12595515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 14603576 - 14603637
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 156  Q
    |||||| ||||||||||||| ||||| || |||||||  ||||  |||||||||||||||||    
T  14603576 ttctttataaatttatggttgtctcaaaaattgtcatggaaatgattgttcaaataacacac 14603637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 17367215 - 17367248
Alignment:
Q  124 gttgtcatacaaatagttgttcaaataacacacc 157  Q
    ||||||| ||||||||||||||||||||||||||    
T  17367215 gttgtcacacaaatagttgttcaaataacacacc 17367248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 22819769 - 22819833
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||    
T  22819769 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctct 22819833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 23662268 - 23662211
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataac 152  Q
    |||||||||||||||||||||||  |||| ||||||   |||| ||||||||||||||    
T  23662268 ttctttgtaaatttatggttatcaaataaattgtcaattaaatggttgttcaaataac 23662211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 33093068 - 33093003
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||| |   || ||||||||||| || || |||| ||||||||||||||||||||||    
T  33093068 ttctttgtaaattaactattgtctcataagttatcgtataaatggttgttcaaataacacacctct 33093003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 42491193 - 42491262
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 164  Q
    |||||||| || |||||||| || || |||||||||  ||||| ||||||||||||||||| ||| ||||    
T  42491193 ttctttgtgaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactccttaa 42491262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 46038782 - 46038840
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||||||||||||||| |||||  | ||||||||||  ||||| ||||||||||||||||    
T  46038782 ttctttgtaaatttatgattatcataaaagttgtcat--aaataattgttcaaataacaca 46038840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 47744470 - 47744389
Alignment:
Q  90 cattgttctttgtaaatttatggttatctcataagttgtcatacaaa-tagttgttcaaataacacacctctttaagaaaaa 170  Q
    |||| ||||||||||| |||||||| || || ||||| |||  |||| ||||||||||||||||||| ||||| || |||||    
T  47744470 catttttctttgtaaaattatggttgtcccaaaagttatcaatcaaaatagttgttcaaataacacaactcttaaaaaaaaa 47744389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 43769831 - 43769894
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    ||||||||||||| |||||| || |||||||| |||   ||||||||||||||||||||| ||||    
T  43769831 ttctttgtaaatt-atggttgtcgcataagttatcaacaaaatagttgttcaaataacactcctc 43769894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 52895401 - 52895445
Alignment:
Q  120 ataagttgtcatacaaatagttgttcaaataacacacctctttaa 164  Q
    |||||||||||  ||||| ||||||||||||||||| ||||||||    
T  52895401 ataagttgtcaatcaaatggttgttcaaataacacaactctttaa 52895445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 34084578 - 34084526
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaata 150  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  34084578 tttgcaaatttatggttgtctcataagttgtcatacaaatagttgttcaaata 34084526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 25127782 - 25127708
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaagaaaa 169  Q
    |||||||||||||||||||| || || || |||||  |||||| |||||||||||||||||||||| ||| ||||    
T  25127782 ttctttgtaaatttatggttgtcccagaatttgtcgcacaaatggttgttcaaataacacacctctataataaaa 25127708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 3552107 - 3552047
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||||||||||||||| ||||| || ||||| |||| ||||| |||||||||||||||||    
T  3552107 ttctttgtaaatttatgattatcacaaaagttatcatccaaatggttgttcaaataacaca 3552047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 30945933 - 30945993
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||||||||| ||||||| |  |||||||| |||||||||| |||||||||||||||||    
T  30945933 ttctttgtaaatctatggttgttccataagttttcatacaaatggttgttcaaataacaca 30945993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 30956191 - 30956255
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||| ||||||| || |||||||| ||||| |||| ||||||||||||||| |||||    
T  30956191 ttctttgtaaatctatggttgtcccataagttttcatataaatggttgttcaaataacaaacctc 30956255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 33019104 - 33019039
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||| |||| |||| |||||| |||| |||| |||||||||||| |||||||||| |||||||    
T  33019104 ttctttgcaaatctatgattatcttataaattgttatacaaatagtttttcaaataactcacctct 33019039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 3832583 - 3832646
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| |||||||||||||||| ||||    
T  3832583 ttctttgtaaatt-atggttgtcccataagttgtcaatcaaatggttgttcaaataacactcctc 3832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 26595468 - 26595536
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttta 163  Q
    ||||||||||| || ||||| | ||| ||||||||||| |||| | ||||||||||||||| |||||||    
T  26595468 ttctttgtaaaattttggttgtttcaaaagttgtcatataaatggatgttcaaataacacaactcttta 26595536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 4820486 - 4820552
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    ||||||||||| || || || ||||| ||||| ||||  |||||||||||||||||||||| |||||    
T  4820486 ttctttgtaaaattttgattgtctcaaaagttatcatgtaaatagttgttcaaataacacaactctt 4820552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 16199569 - 16199635
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  16199569 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 16199635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 30621859 - 30621917
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 153  Q
    |||||||||||| |||||||||  |||||||| |||  ||||| |||||||||||||||    
T  30621859 ttctttgtaaatatatggttattccataagttatcaatcaaatggttgttcaaataaca 30621917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 31883255 - 31883189
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    ||||||||||| |||||||| || || || ||||||  ||||||||||||||||||| ||| |||||    
T  31883255 ttctttgtaaaattatggttgtcccaaaaattgtcaatcaaatagttgttcaaataatacaactctt 31883189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 33656893 - 33656955
Alignment:
Q  98 tttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||||||| ||  |||| ||||||  ||||| ||||||||||||||||| ||||    
T  33656893 tttgtaaatttatggttgtcaaataaattgtcaatcaaatggttgttcaaataacacatctct 33656955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 10826622 - 10826691
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 164  Q
    |||||||||||||  ||||| || || ||||| |||  ||||| |||||||||||||||||| |||||||    
T  10826622 ttctttgtaaattagtggttgtcacaaaagttatcactcaaatggttgttcaaataacacacttctttaa 10826691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 18141252 - 18141188
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||    
T  18141252 ttctttgtaaatt-atggttgtcacaaaagttgtcaaccaaatggttgttcaaataacactcctct 18141188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 2159257 - 2159197
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||||||||||||||||| |  |||||||| ||||||| ||  ||||| ||||||||||    
T  2159257 ttctttgtaaatttatggttgttccataagttatcatacacatgattgtttaaataacaca 2159197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 6531131 - 6531064
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttta 163  Q
    ||||||||||||| |||||| || ||| |||| |||  ||||| |||||||||||||||| ||||||||    
T  6531131 ttctttgtaaatt-atggttgtcccattagttatcaaccaaatggttgttcaaataacactcctcttta 6531064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 13143333 - 13143270
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| ||||    
T  13143333 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctc 13143270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 29639263 - 29639203
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||||||||| |||  |||| |||||  |||| |||||| |||||||||||||||||||    
T  29639263 ttctttgtaaatctataattatatcatatattgttatacaattagttgttcaaataacaca 29639203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 29642993 - 29642933
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||||||||| |||  |||| |||||  |||| |||||| |||||||||||||||||||    
T  29642993 ttctttgtaaatctataattatatcatatattgttatacaattagttgttcaaataacaca 29642933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 24405907 - 24405841
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||||||||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||| ||||    
T  24405907 ttctttgtaaatttatagttgtttcaaaagttgtcaaacaaatagttgttcaaataacacacttctt 24405841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 27546185 - 27546249
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    ||||||||| ||||||| || ||||| ||||||||| |||||||||| |||||||||||||||||    
T  27546185 ttctttgtacatttatgattgtctcaaaagttgtcacacaaatagttattcaaataacacacctc 27546249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 18695440 - 18695504
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||||||||||||||| ||  ||||||||||   ||||| |||||||||||||||||||||||    
T  18695440 ctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctctt 18695504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 6940099 - 6940037
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||||||||| ||  ||||||||||   ||||| |||||||||||||||||||||    
T  6940099 ctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacacacctc 6940037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 41175657 - 41175592
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| |||||||||||||||| ||||||    
T  41175657 ttctttgtaaatt-atggttgtcacataagttgtcaaccaaatggttgttcaaataacactcctctt 41175592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 1293069 - 1293013
Alignment:
Q  96 tctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataac 152  Q
    ||||||||||||||||||| ||  | |||||||||||||||| ||| ||||||||||    
T  1293069 tctttgtaaatttatggttgtccaaaaagttgtcatacaaatggttattcaaataac 1293013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 9939381 - 9939317
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||||||||||||||| ||  |||| |||||   ||||| |||||||||||||||||||||||    
T  9939381 ctttgtaaatttatggttgtcaaataaattgtctatcaaatggttgttcaaataacacacctctt 9939317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 10649555 - 10649621
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||||    
T  10649555 ttctttgtaaatt-atggttgtcacaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 10649621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 15952996 - 15952938
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 154  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| ||||||||||||||||    
T  15952996 ttctttgtaaatt-atggttgtcacataagttgtcaaccaaatggttgttcaaataacac 15952938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 33655365 - 33655298
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||| ||||||||||||| |  || ||||| ||||| |||||||| ||||||||||||| ||||||    
T  33655365 ttctttataaatttatggttgtaccaaaagttatcataaaaatagttattcaaataacacaactcttt 33655298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 17626105 - 17626171
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  17626105 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 17626171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 19839937 - 19839873
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||| |||||| || || ||||| |||  |||||||||||||||||||||| |||||    
T  19839937 ttctttgtaaatt-atggttgtcccaaaagttatcaaccaaatagttgttcaaataacacgcctct 19839873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 34546535 - 34546600
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    |||||| || |||||| ||| || || || |||||||||||| |||||||||||||||||| ||||    
T  34546535 ttctttatacatttatagttgtcccaaaaattgtcatacaaaaagttgttcaaataacacaactct 34546600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 43441858 - 43441922
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||| |||||| ||| | |||||||||  ||||| |||||||||||||||| |||||    
T  43441858 ttctttgtaaatt-atggttgtcttaaaagttgtcaaccaaatggttgttcaaataacactcctct 43441922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 8675384 - 8675321
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| ||||    
T  8675384 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctc 8675321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 21353263 - 21353331
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttta 163  Q
    ||||||||||| |||||||| || || |||||||||  ||||| |||||| ||||||| || |||||||    
T  21353263 ttctttgtaaaattatggttgtcccaaaagttgtcaatcaaatggttgtttaaataactcaactcttta 21353331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 36321748 - 36321684
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||| ||||||| |   ||||||||| |  ||||| |||||||||||||||||||||    
T  36321748 ttctttgtaaatctatggtttttcaataagttgttaatcaaatggttgttcaaataacacacctc 36321684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 52564601 - 52564536
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    |||||||||||| ||||||| || |||||||||||||| |||| ||||||||||||||| ||||||    
T  52564601 ttctttgtaaatctatggttgtcccataagttgtcatagaaatggttgttcaaataacatacctct 52564536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 34627833 - 34627773
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||||||||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||    
T  34627833 ttctttgtaaatttatggttgtcttataagttatcataaaaataattgttcaaataacaca 34627773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 46966052 - 46965984
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttta 163  Q
    ||||||||||||||||| || ||  | ||||||||| |||||| |||||||||||||||||||||||||    
T  46966052 ttctttgtaaatttatgattgtccgaaaagttgtcacacaaatggttgttcaaataacacacctcttta 46965984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 11075321 - 11075270
Alignment:
Q  102 taaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 153  Q
    ||||||||||||| ||||| |||||||||||||||| |||||||||||||||    
T  11075321 taaatttatggttgtctcaaaagttgtcatacaaatggttgttcaaataaca 11075270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 819165 - 819091
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaagaaaa 169  Q
    ||||||||||||| ||| |||||||| ||||||||||  |||| |||||| |||||||||| ||||||| |||||    
T  819165 ttctttgtaaattaatgattatctcaaaagttgtcatcaaaatggttgtttaaataacacatctctttatgaaaa 819091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 11056878 - 11056825
Alignment:
Q  102 taaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||||||||||| ||||| ||||||| |||||||| |||||||||||||||||    
T  11056878 taaatttatggttgtctcaaaagttgttatacaaatggttgttcaaataacaca 11056825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 27511844 - 27511904
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 156  Q
    |||||||||||||||||||| || || ||||||||| |||||| ||||||||||||||||||    
T  27511844 ttctttgtaaatttatggttgtc-caaaagttgtcacacaaattgttgttcaaataacacac 27511904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 54007581 - 54007646
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    |||||| ||||||||||||| ||| ||||||||||||||| || || ||||||||||||| |||||    
T  54007581 ttctttataaatttatggttgtcttataagttgtcatacagatggtcgttcaaataacacgcctct 54007646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 46965961 - 46965893
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttta 163  Q
    ||||||||||||||||| || ||  | ||||||||| |||||| ||||||||||||||||| |||||||    
T  46965961 ttctttgtaaatttatgattgtcctaaaagttgtcacacaaattgttgttcaaataacacatctcttta 46965893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 29030756 - 29030694
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||  ||| |||| || |||||||||  |||||||||||||||||||||||||||    
T  29030756 ctttgtaaattagtggctatcacaaaagttgtcactcaaatagttgttcaaataacacacctc 29030694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 55361185 - 55361120
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctct 160  Q
    ||||||||||||  |||||| || |||||||| |||| ||||||||||||||||||| ||| ||||    
T  55361185 ttctttgtaaatcaatggttgtcacataagttttcattcaaatagttgttcaaataaaacaactct 55361120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 12762641 - 12762581
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||||||||||||||||| || ||||| |||||||  ||||  ||||||||||||||||    
T  12762641 ttctttgtaaatttatggttgtcccataaattgtcatgtaaatgattgttcaaataacaca 12762581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 26645146 - 26645201
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataa 151  Q
    ||||||||||||| ||| ||||| ||||| ||||||| |||||||||||||||||||    
T  26645146 ttctttgtaaatt-atgattatcccataaattgtcatccaaatagttgttcaaataa 26645201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 6093830 - 6093771
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 154  Q
    ||||||| |||| ||||||||||  ||||||||||| | |||||||| ||||||||||||    
T  6093830 ttctttgaaaatatatggttatccaataagttgtcaaataaatagtttttcaaataacac 6093771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 6178369 - 6178310
Alignment:
Q  103 aaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||| | ||  ||||||||||| |||| ||||||||||||||||| ||||||    
T  6178369 aaatttatggttgtatcgaaagttgtcataaaaatggttgttcaaataacacaactcttt 6178310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 33256435 - 33256494
Alignment:
Q  102 taaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    ||||||||||||| ||  | ||||||||| |||||| ||||||||||||||||| |||||    
T  33256435 taaatttatggttgtcctaaaagttgtcacacaaatggttgttcaaataacacatctctt 33256494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 39697173 - 39697115
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacac 154  Q
    ||||||||||||| |||||| || || |||||||||  ||||||||||||||||||||||    
T  39697173 ttctttgtaaatt-atggttgtcccaaaagttgtcaatcaaatagttgttcaaataacac 39697115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 45205403 - 45205462
Alignment:
Q  102 taaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||||||  || ||||| ||||||||| |||||| ||||||||||||| |||||||||    
T  45205403 taaatttataattgtctcaaaagttgtcacacaaatggttgttcaaataatacacctctt 45205462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 51465865 - 51465799
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    ||||||||||||| |||||| || || |||||||||  ||||| |||||||||||||||| |||||||    
T  51465865 ttctttgtaaatt-atggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 51465799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 6999301 - 6999355
Alignment:
Q  107 ttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||||| || ||||||||||||  ||||| |||||||||||||||| ||||||    
T  6999301 ttatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctctt 6999355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 9158824 - 9158759
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaat-agttgttcaaataacacacctct 160  Q
    ||||||||||||| |||||| || ||||||||||||  ||||| ||||||||||||||||| |||||    
T  9158824 ttctttgtaaatt-atggttgtcacataagttgtcaaccaaattagttgttcaaataacactcctct 9158759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 9719394 - 9719340
Alignment:
Q  101 gtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||| ||||||||||| || |||||||||  ||||| |||||||||||||||||    
T  9719394 gtaaaattatggttatcccaaaagttgtcaatcaaatggttgttcaaataacaca 9719340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 21217631 - 21217697
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  21217631 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 21217697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 37057009 - 37056943
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    ||||||||||| |  ||||| ||||| ||||||||||| |||| | ||||||||||||||| |||||    
T  37057009 ttctttgtaaaatattggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 37056943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 13348086 - 13348017
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaa 164  Q
    ||||||||||| || ||||| || || ||||||||||| |||| | ||||||||||||| | ||||||||    
T  13348086 ttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgttcaaataacataactctttaa 13348017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 29573305 - 29573240
Alignment:
Q  97 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 162  Q
    |||||||||||||||||| ||  |||| |||||   ||||| ||||||||||||||| ||||||||    
T  29573305 ctttgtaaatttatggttgtcaaataaattgtctatcaaatggttgttcaaataacatacctcttt 29573240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 36412243 - 36412307
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatac-aaatagttgttcaaataacacacctc 159  Q
    ||||||||||||| |||||| || |||||||||||| || |||| |||||||||||||||| ||||    
T  36412243 ttctttgtaaatt-atggttgtcccataagttgtcaaaccaaatggttgttcaaataacactcctc 36412307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 45754758 - 45754819
Alignment:
Q  95 ttctttgtaaattt-atggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||||||||||| |||||| ||| ||||||| |||  ||||| |||||||||||||||||    
T  45754758 ttctttgtaaattttatggttgtctaataagttatcaatcaaatggttgttcaaataacaca 45754819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 23155390 - 23155330
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||||||||| ||||| |||||| | ||||| |||   ||||||||||||||||||||||    
T  23155390 ttctttgtaaaattatgattatcttaaaagttatcaattaaatagttgttcaaataacaca 23155330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 23592577 - 23592637
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | |||||||||||||||    
T  23592577 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacaca 23592637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 23600712 - 23600772
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    |||||| |||| || ||||| ||||| ||||||||||| |||| | |||||||||||||||    
T  23600712 ttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacaca 23600772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 38523294 - 38523346
Alignment:
Q  103 aaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||||||||||||  ||||| || || ||||||| |||||||||||||||||    
T  38523294 aaatttatggttattccataaattatcgtacaaatggttgttcaaataacaca 38523346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 42889104 - 42889164
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacaca 155  Q
    ||||||||||| || ||||||| ||| ||||||||||  |||||| |||| ||||||||||    
T  42889104 ttctttgtaaaattttggttatatcaaaagttgtcatctaaatagatgtttaaataacaca 42889164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 46965870 - 46965806
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctc 159  Q
    |||||||||||||||||||| ||  | ||||||||| ||||||  | ||| ||||||||||||||    
T  46965870 ttctttgtaaatttatggttgtcctaaaagttgtcacacaaatgatcgtttaaataacacacctc 46965806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 12052 - 12117
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctctt 161  Q
    ||||||||||||| |||||| || || |||||||||  |||||||||||||||||||||| ||||||    
T  12052 ttctttgtaaatt-atggttgtcgcaaaagttgtcaaccaaatagttgttcaaataacactcctctt 12117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 22887 - 22826
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 156  Q
    |||||| ||| ||||||||| | ||| ||||||||  | |||||||||||||||||||||||    
T  22887 ttctttataattttatggttgtttcaaaagttgtctcataaatagttgttcaaataacacac 22826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 213802 - 213741
Alignment:
Q  95 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacac 156  Q
    |||||| ||||||||||||| ||||| || |||||||  ||||  |||||||||||||||||    
T  213802 ttctttataaatttatggttgtctcaaaaattgtcatggaaatgattgttcaaataacacac 213741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 469581 - 469520
Alignment:
Q  102 taaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttta 163  Q
    ||||||||||||| |  || || || |||| ||||||||||||||||||||||| |||||||    
T  469581 taaatttatggtttttacaaaaattatcatccaaatagttgttcaaataacacaactcttta 469520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 101731 - 101763
Alignment:
Q  166 aaaaagtagaaaaagaaaagaattaaataatat 198  Q
    ||||||||||||||||||||| |||||||||||    
T  101731 aaaaagtagaaaaagaaaagagttaaataatat 101763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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