View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_101 (Length: 262)
Name: NF3726_low_101
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_101 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 42060375 - 42060142
Alignment:
| Q |
10 |
attattcttcaaacttgatgtatattttcatgactaattaatgaggatatgagagatcgcaaatatggcgctcaaaagacgggacatcccttggtaacaa |
109 |
Q |
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| T |
42060375 |
attattcttcaaacttgatgtatattttcatgactaattaatgaggatataagagatcgcaaatatggcgctcaaaagacgggacatcccttggtaacaa |
42060276 |
T |
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| Q |
110 |
taccaggagctgtagggcatttagccaagggacaatgatcatctgcctcaagaccccaccaagttggaccaaagacatcataagattgaagtgaaaaata |
209 |
Q |
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| T |
42060275 |
taccaggagctgtagggcatttagccaagggacaatgatcatctgcctcaagaccccaccaagttggaccaaagacatcataagattgaagtgaaaaata |
42060176 |
T |
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| Q |
210 |
gagcaacacagccatgaaagcaataccagcatcc |
243 |
Q |
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| T |
42060175 |
gagcaacacagccatgaaagcaataccagcatcc |
42060142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 83 - 243
Target Start/End: Complemental strand, 42075599 - 42075439
Alignment:
| Q |
83 |
aaaagacgggacatcccttggtaacaataccaggagctgtagggcatttagccaagggacaatgatcatctgcctcaagaccccaccaagttggaccaaa |
182 |
Q |
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| T |
42075599 |
aaaagacagggcatcccttggctttaataccaggagctgtagggcaattagccaagggacaatgatcatctgacttaagaccccaccaagctggaccaaa |
42075500 |
T |
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| Q |
183 |
gacatcataagattgaagtgaaaaatagagcaacacagccatgaaagcaataccagcatcc |
243 |
Q |
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| T |
42075499 |
gataccataagattgaagtagaaaatagagcaacacagccatgaaagcaacaccagcatcc |
42075439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 243
Target Start/End: Complemental strand, 42084214 - 42084019
Alignment:
| Q |
48 |
taatgaggatatgagagatcgcaaatatggcgctcaaaagacgggacatcccttggtaacaataccaggagctgtagggcatttagccaagggacaatga |
147 |
Q |
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| T |
42084214 |
taatgaggataagatagaatgcaactatggagtttaaaagacagggcatcccttggctttaataccaggagctgtagggcaattaaccaagggacactga |
42084115 |
T |
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| Q |
148 |
tcatctgcctcaagaccccaccaagttggaccaaagacatcataagattgaagtgaaaaatagagcaacacagccatgaaagcaataccagcatcc |
243 |
Q |
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| T |
42084114 |
tcatctgacttaagaccccaccaagctggaccaatgatatcataagattgaagtgcaaaatagagcaacacagccatgaaagcaacaccagcatcc |
42084019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 36523153 - 36523212
Alignment:
| Q |
150 |
atctgcctcaagaccccaccaagttggaccaaagacatcataagattgaagtgaaaaata |
209 |
Q |
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| T |
36523153 |
atctgcttcaagaccccaccaagttggaccataaataccataagattgaagagaaaaata |
36523212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 36529954 - 36530045
Alignment:
| Q |
115 |
ggagctgtagggcatttagccaagggacaatgatcatctgcctcaagaccccaccaagttggaccaaagacatcataagattgaagtgaaaaata |
209 |
Q |
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||||||||||||||||||||||| || || || || || |||||||||||||||||||||||| | | | | ||||||||||| |||||||| |
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| T |
36529954 |
ggagctgtagggcatttagccaaagggcagtggtc---tggttcaagaccccaccaagttggaccataaataccgtaagattgaagagaaaaata |
36530045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 36535566 - 36535657
Alignment:
| Q |
115 |
ggagctgtagggcatttagccaagggacaatgatcatctgcctcaagaccccaccaagttggaccaaagacatcataagattgaagtgaaaaata |
209 |
Q |
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||||||||||| ||| ||||||| || || ||||| ||| ||||| |||||||| ||||||||||| | | |||| |||||||| |||||||| |
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| T |
36535566 |
ggagctgtaggacatctagccaaagggcagtgatc---tgcttcaaggccccaccatgttggaccaaaaataccataggattgaagagaaaaata |
36535657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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