View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_low_104 (Length: 260)

Name: NF3726_low_104
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_low_104
NF3726_low_104
[»] chr5 (3 HSPs)
chr5 (16-251)||(13869376-13869608)
chr5 (132-251)||(27641010-27641129)
chr5 (16-78)||(27641142-27641204)
[»] scaffold0386 (1 HSPs)
scaffold0386 (16-251)||(965-1197)
[»] chr4 (2 HSPs)
chr4 (16-251)||(33878756-33878988)
chr4 (178-215)||(46673679-46673716)
[»] chr3 (1 HSPs)
chr3 (16-251)||(49851111-49851332)
[»] chr7 (2 HSPs)
chr7 (16-251)||(29735392-29735624)
chr7 (178-215)||(8720808-8720845)
[»] chr8 (3 HSPs)
chr8 (112-251)||(38460563-38460702)
chr8 (16-62)||(38460700-38460746)
chr8 (178-215)||(44428121-44428158)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 13869608 - 13869376
Alignment:
Q  16 tcaacctttcaagagatctgaatttccaaatgcaaagttattaaaactaactctcttaatagaatttgacccattgctcgattggattgcaataataaca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||   ||    
T  13869608 tcaacctttcaagagatctgaatttccaaatgcaaagttattaaaactaactattttaatagaatttgacccattgctcgattggattgcaataa---ca 13869512  T
Q  116 cccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcacaatt 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13869511 cccaatacagcatgatttagaaacaatctctacatgatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcataatt 13869412  T
Q  216 taaacaacaagagaagtttggcgtttctagaattat 251  Q
    ||||||||||||||||||||||||||||||||||||    
T  13869411 taaacaacaagagaagtttggcgtttctagaattat 13869376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 132 - 251
Target Start/End: Complemental strand, 27641129 - 27641010
Alignment:
Q  132 ttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcacaatttaaacaacaagagaag 231  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27641129 ttagaaacaatctctacatgatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcataatttaaacaacaagagaag 27641030  T
Q  232 tttggcgtttctagaattat 251  Q
    ||||||||||||||||||||    
T  27641029 tttggcgtttctagaattat 27641010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 27641204 - 27641142
Alignment:
Q  16 tcaacctttcaagagatctgaatttccaaatgcaaagttattaaaactaactctcttaataga 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  27641204 tcaacctttcaagagatctgaatttccaaatgcaaagttattaaaactaactattttaataga 27641142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 965 - 1197
Alignment:
Q  16 tcaacctttcaagagatctgaatttccaaatgcaaagttattaaaactaactctcttaatagaatttgacccattgctcgattggattgcaataataaca 115  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||   |||    
T  965 tcaacatttcaagagatttgaatttccaaatgcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaata---aca 1061  T
Q  116 cccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcacaatt 215  Q
    |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||||    
T  1062 cccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatt 1161  T
Q  216 taaacaacaagagaagtttggcgtttctagaattat 251  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1162 taaacaacaagagaagtttggagtttctagaattat 1197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 33878988 - 33878756
Alignment:
Q  16 tcaacctttcaagagatctgaatttccaaatgcaaagttattaaaactaactctcttaatagaatttgacccattgctcgattggattgcaataataaca 115  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||   ||    
T  33878988 tcaacatttcaagagatttgaatttccaaatgcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataa---ca 33878892  T
Q  116 cccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcacaatt 215  Q
    |||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||||    
T  33878891 cccaatacagcatggtttagaaacaatctccgcatgatttggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatt 33878792  T
Q  216 taaacaacaagagaagtttggcgtttctagaattat 251  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33878791 taaacaacaagagaagtttggagtttctagaattat 33878756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 46673716 - 46673679
Alignment:
Q  178 caatgagcagtggatgagacataaccatcttcacaatt 215  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  46673716 caatgagtagtggatgagtcataaccatcttcacaatt 46673679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 49851111 - 49851332
Alignment:
Q  16 tcaacctttcaagagatctgaatttccaaatgcaaagttattaaaactaactctcttaatagaatttgacccattgctcgattggattgcaataataaca 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||    
T  49851111 tcaaccttttaagagatctgaatttccaaatgcaaagttattaaaactaactattttaatagaatttgacccattgctcaattggattgcaataataaca 49851210  T
Q  116 cccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcacaatt 215  Q
    ||||||||||||||||||||||||||||||||||              |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49851211 cccaatacagcatgatttagaaacaatctctaca--------------taattatggtgttacaataagcagtggatgagacataaccatcttcacaatt 49851296  T
Q  216 taaacaacaagagaagtttggcgtttctagaattat 251  Q
    ||||||||||| ||||||||||||||||||||||||    
T  49851297 taaacaacaagggaagtttggcgtttctagaattat 49851332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 29735392 - 29735624
Alignment:
Q  16 tcaacctttcaagagatctgaatttccaaatgca------aagttattaaaactaactctcttaatagaatttgacccattgctcgattggattgcaata 109  Q
    ||||||||| ||||||||||||||||||||||||      |||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||    
T  29735392 tcaaccttttaagagatctgaatttccaaatgcatacaaaaagttattaaaactaactattttaatagaatttaacccattgctcgattggattgcaata 29735491  T
Q  110 ataacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttc 209  Q
       ||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||      ||||||||||||||||||||    
T  29735492 ---acacccaatacagtatggtttagaaacaatctctacatgatttggatccgttaattatggtgttgcaatga------gatgagacataaccatcttc 29735582  T
Q  210 acaatttaaacaacaagagaagtttggcgtttctagaattat 251  Q
    ||||||||||||||||||| | |||||| ||| |||||||||    
T  29735583 acaatttaaacaacaagaggaatttggcatttttagaattat 29735624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 8720845 - 8720808
Alignment:
Q  178 caatgagcagtggatgagacataaccatcttcacaatt 215  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  8720845 caatgagtagtggatgagacataaccatcttcacaatt 8720808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 38460702 - 38460563
Alignment:
Q  112 aacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcac 211  Q
    ||||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38460702 aacacccaatacaacatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagcagtggatgagacataaccatcttcac 38460603  T
Q  212 aatttaaacaacaagagaagtttggcgtttctagaattat 251  Q
    ||||||||||||||||||  ||||| ||||||||| ||||    
T  38460602 aatttaaacaacaagagatatttggagtttctagacttat 38460563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 38460746 - 38460700
Alignment:
Q  16 tcaacctttcaagagatctgaatttccaaatgcaaagttattaaaac 62  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  38460746 tcaacctttcaagagatttgaatttccaaatgcaaagttattaaaac 38460700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 44428121 - 44428158
Alignment:
Q  178 caatgagcagtggatgagacataaccatcttcacaatt 215  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  44428121 caatgagtagtggatgagacataaccatcttcacaatt 44428158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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