View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_106 (Length: 258)
Name: NF3726_low_106
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_106 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 24617792 - 24618013
Alignment:
| Q |
19 |
aacttatctacttgtgatgtggagaacaaagttctaaatcgagccgcaagtattagtattacaaaaaggatcttccaagacttctccaatatgtcttcct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24617792 |
aacttatctacttgtgatgtggagaacaaagttctaaatcgagccgcaagtattagtattacaaaaaggatcttccaagacttctccaatatgtcttcct |
24617891 |
T |
|
| Q |
119 |
caacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggccactcaaacaaggaacaaaagtcgtatgatgaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24617892 |
caacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggccactcaaacaaggaacaaaagtcgtatgatgaca |
24617991 |
T |
|
| Q |
219 |
aattcgtttggatagacaccac |
240 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
24617992 |
aattcgtttggatagacgccac |
24618013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 24105922 - 24105876
Alignment:
| Q |
25 |
tctacttgtgatgtggagaacaaagttctaaatcgagccgcaagtat |
71 |
Q |
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|
| T |
24105922 |
tctacttgtgatgtggagaacaaagttctaaatcgagcagcaagtat |
24105876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 24113329 - 24113288
Alignment:
| Q |
30 |
ttgtgatgtggagaacaaagttctaaatcgagccgcaagtat |
71 |
Q |
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| T |
24113329 |
ttgtggtgtggagaacaaagttctaaattgagccgcaagtat |
24113288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 84 - 235
Target Start/End: Original strand, 1343438 - 1343589
Alignment:
| Q |
84 |
aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaagg |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
1343438 |
aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaagg |
1343537 |
T |
|
| Q |
184 |
ccactcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatagac |
235 |
Q |
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| ||||||||| |||| |||||| |||||||| ||||||||| |||||||| |
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| T |
1343538 |
acgctcaaacaaagaacgaaagtcttatgatgagaaattcgttaggatagac |
1343589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 1356149 - 1355998
Alignment:
| Q |
84 |
aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaagg |
183 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
1356149 |
aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaagg |
1356050 |
T |
|
| Q |
184 |
ccactcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatagac |
235 |
Q |
| |
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| ||||||||| |||| |||||| |||||||| ||||||||| |||||||| |
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| T |
1356049 |
acgctcaaacaaagaacgaaagtcttatgatgagaaattcgttaggatagac |
1355998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 85 - 233
Target Start/End: Original strand, 1360543 - 1360691
Alignment:
| Q |
85 |
aggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggc |
184 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| || |||| | || ||||||||| | |||||||||||||||||||| |||| ||||| |||||||| |
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| T |
1360543 |
aggatcttccaagagttctgcaatatgtcttcctgaaaaagtaagtcttgcaatgttgaacttaattcttgattattgtctatttcatcacatacaaggc |
1360642 |
T |
|
| Q |
185 |
cactcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatag |
233 |
Q |
| |
|
||||||||||||||| ||| | ||||||||| |||| ||| |||||| |
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| T |
1360643 |
cactcaaacaaggaaagaaaattgtatgatgaggaatttgttaggatag |
1360691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 1349886 - 1350035
Alignment:
| Q |
86 |
ggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggcc |
185 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||| | |||| || |||| | || ||||||||||||||||| |||| ||||| ||||||||| |
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| T |
1349886 |
ggatcttgcaagagttctccaatatgtcttcctcaacaagtaagtccttcattgttgagctcaattcttgattattgtcaatttcatcacatacaaggcc |
1349985 |
T |
|
| Q |
186 |
actcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatagac |
235 |
Q |
| |
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|||| ||||||||| ||| | |||||||| ||||| ||| |||||||| |
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| T |
1349986 |
actccaacaaggaaagaaaattgtatgatgcgaaatttgttaggatagac |
1350035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 11366705 - 11366812
Alignment:
| Q |
90 |
cttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggccactc |
189 |
Q |
| |
|
||||||||| || | || ||||||||||||||||||||| |||||||||| | | ||||||||||||||| ||||||||| |||| |||| ||||| ||| |
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| T |
11366705 |
cttccaagaattgtgcagtatgtcttcctcaacaagtcagtcctgcaatgctgagcttaattcttgattactgtcgatttcatcaagtactaggccgctc |
11366804 |
T |
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| Q |
190 |
aaacaagg |
197 |
Q |
| |
|
|||||||| |
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|
| T |
11366805 |
aaacaagg |
11366812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 1353313 - 1353411
Alignment:
| Q |
145 |
cttaattcttgattattgtcgatttgatcacgtacaaggccactcaaa---caaggaacaaaagtcgtatgatgacaaattcgtttggatagacaccac |
240 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||| ||||| ||| |||| ||||||||||| ||| |||| ||| ||||| ||||||| |
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| T |
1353313 |
cttaattcttgattattgtcgatttcatcacgtaaaaggccgttcaaacgtcaaagaacgaaagtcgtatgttgagaaatctgttaggataaacaccac |
1353411 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 43365210 - 43365059
Alignment:
| Q |
86 |
ggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggcc |
185 |
Q |
| |
|
||||||||||||| || | || |||||||||||||||| |||| | || |||||| | ||| |||||| |||||||||||||| |||| | || ||||| |
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|
| T |
43365210 |
ggatcttccaagaattgtgcagtatgtcttcctcaacaggtcagttctccaatgtggagcttgattcttaattattgtcgatttcatcaagcaccaggcc |
43365111 |
T |
|
| Q |
186 |
actcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatagacac |
237 |
Q |
| |
|
|||||||||||||| |||||| |||||||| | |||||| ||||||||| |
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|
| T |
43365110 |
gctcaaacaaggaacgaaagtcctatgatgatagtttcgttaagatagacac |
43365059 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 43369359 - 43369219
Alignment:
| Q |
85 |
aggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggc |
184 |
Q |
| |
|
|||||||||||||| || | ||| ||||||||||||||| || | | || |||||| | |||||||||| |||||||||||||| || | || |||| |
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|
| T |
43369359 |
aggatcttccaagaattgtgcaacatgtcttcctcaacaggttagttcttcaatgtggagcttaattcttaattattgtcgatttcgtctagcaccaggc |
43369260 |
T |
|
| Q |
185 |
cactcaaacaaggaacaaaagtcgtatgatgacaaattcgt |
225 |
Q |
| |
|
| |||| |||||||||||||| |||||||||| || ||||| |
|
|
| T |
43369259 |
cgctcagacaaggaacaaaaggcgtatgatgataatttcgt |
43369219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 29389361 - 29389250
Alignment:
| Q |
86 |
ggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggcc |
185 |
Q |
| |
|
||||||||||| | || | | |||||||||||| || ||||| ||||||| ||||| | |||| |||||||||||||||| ||| |||| |||| ||||| |
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| T |
29389361 |
ggatcttccaaaaattgtgcgatatgtcttcctgaaaaagtctctcctgctatgttgagcttagttcttgattattgtcgttttcatcaagtaccaggcc |
29389262 |
T |
|
| Q |
186 |
actcaaacaagg |
197 |
Q |
| |
|
||||||||||| |
|
|
| T |
29389261 |
gctcaaacaagg |
29389250 |
T |
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