View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_low_107 (Length: 256)
Name: NF3726_low_107
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_107 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23896206 - 23896097
Alignment:
| Q |
1 |
ccatctcctacctctttcgatcaagtgtttgagtccatatttgcttacattgataggctgtttgtcatagtgaggcctaggaagctgctctttatggcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23896206 |
ccatctcctacctctttcgatcaagtgtttgagtccatatttgcttacattgataggctgtttgtcatagtgaggcctaggaagctgctctttatggcta |
23896107 |
T |
|
| Q |
101 |
ttggtttgtg |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
23896106 |
ttggtttgtg |
23896097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23184173 - 23184064
Alignment:
| Q |
1 |
ccatctcctacctctttcgatcaagtgtttgagtccatatttgcttacattgataggctgtttgtcatagtgaggcctaggaagctgctctttatggcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23184173 |
ccatctcctacctctttcgatcaagtgtttgagtccatatttgcttacattgataggctgtttgtcatagtgaggcctaggaagctgctctttatggcta |
23184074 |
T |
|
| Q |
101 |
ttggtttgtg |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
23184073 |
ttggtttgtg |
23184064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 7862308 - 7862389
Alignment:
| Q |
25 |
gtgtttgagtccatatttgcttacattgataggctgtttgtcatagtgaggcctaggaagctgctctttatggctattggtt |
106 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
7862308 |
gtgtttgagtgcatgtttgattacattgataggctgtttaacatggtgcggcctaggaagcttctctttatggctattggtt |
7862389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University