View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_109 (Length: 255)
Name: NF3726_low_109
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_109 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 47248796 - 47249027
Alignment:
| Q |
9 |
gacatcatcaactaatagtaataaaacaatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaagggaaacataacagttgc |
108 |
Q |
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| T |
47248796 |
gacatcatcaactaatagtaataaaacaatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaagggaaacataacagttgc |
47248895 |
T |
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| Q |
109 |
acataaacatggtcagtccaattatttcatttcagcaaggatttatatattcaactttacagtaaaaaatgtccttacttaagaaatgttatcacattag |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47248896 |
acataaacatggtcagtccaattatttcatttcagcaaggatttatatattcaactttacagtaataaatgtccttacttaagaaatgttatcacattag |
47248995 |
T |
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| Q |
209 |
ggttgcccatttcaaagtttagggacttaagt |
240 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
47248996 |
ggttgcccatttcaaagtttagggacttaagt |
47249027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 47242366 - 47242574
Alignment:
| Q |
24 |
tagtaataaaacaatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaagggaaacataacagttgcacataaacatggtca |
123 |
Q |
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|||||||||||||| | ||||| | |||||| |||||||| |||||||||||| ||| ||||||||| | || || | || || | ||||||| | | |
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| T |
47242366 |
tagtaataaaacaacaattcaaattaccttttgattctcagaagcaatcccaacaaaactcctgaaatg-aatcacagcaagtgaaaataaacagaatta |
47242464 |
T |
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| Q |
124 |
gtccaattat-ttcatttcagcaaggatttatatattcaactttacagtaaaaaatgtccttacttaagaaatgttatcacattagggttgcccatttca |
222 |
Q |
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| T |
47242465 |
gtccaattaacttcatttcaacaaggctttagatattcaaattcacaataaaaaatgtatttactttagaaatgtgatgacattagggttgcccatttca |
47242564 |
T |
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| Q |
223 |
aagtttaggg |
232 |
Q |
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||||| |||| |
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| T |
47242565 |
aagttcaggg |
47242574 |
T |
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