View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_low_11 (Length: 522)

Name: NF3726_low_11
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_low_11
NF3726_low_11
[»] chr7 (13 HSPs)
chr7 (18-512)||(2870979-2871489)
chr7 (51-143)||(31492115-31492207)
chr7 (55-143)||(29059817-29059905)
chr7 (62-143)||(19477297-19477378)
chr7 (51-143)||(13254138-13254230)
chr7 (55-143)||(28537402-28537490)
chr7 (66-134)||(37900423-37900491)
chr7 (66-134)||(37906934-37907002)
chr7 (68-143)||(24512638-24512713)
chr7 (77-143)||(8839344-8839410)
chr7 (298-364)||(21222860-21222926)
chr7 (51-88)||(30614719-30614756)
chr7 (327-359)||(31426711-31426743)
[»] chr6 (6 HSPs)
chr6 (51-143)||(21910217-21910309)
chr6 (37-143)||(5944854-5944960)
chr6 (54-143)||(12411160-12411249)
chr6 (77-148)||(3237927-3237998)
chr6 (44-135)||(28933158-28933249)
chr6 (111-143)||(15614670-15614702)
[»] scaffold0189 (1 HSPs)
scaffold0189 (27-134)||(10973-11080)
[»] chr2 (13 HSPs)
chr2 (77-146)||(37568790-37568859)
chr2 (77-143)||(18105425-18105491)
chr2 (327-364)||(13292916-13292953)
chr2 (54-143)||(31579269-31579358)
chr2 (55-143)||(5394409-5394496)
chr2 (55-143)||(17627571-17627659)
chr2 (55-143)||(17672643-17672731)
chr2 (44-143)||(12133260-12133359)
chr2 (68-135)||(42745170-42745237)
chr2 (77-135)||(44732636-44732694)
chr2 (37-143)||(44752217-44752323)
chr2 (290-359)||(27671295-27671364)
chr2 (73-141)||(38463969-38464037)
[»] chr1 (10 HSPs)
chr1 (51-134)||(35692506-35692589)
chr1 (55-143)||(13546438-13546526)
chr1 (65-147)||(31733742-31733824)
chr1 (65-143)||(36982367-36982445)
chr1 (49-141)||(10303128-10303220)
chr1 (39-143)||(40019253-40019356)
chr1 (302-359)||(7343672-7343729)
chr1 (62-143)||(25655312-25655393)
chr1 (66-134)||(24801402-24801470)
chr1 (300-356)||(47210101-47210157)
[»] chr3 (7 HSPs)
chr3 (77-143)||(22288247-22288313)
chr3 (55-140)||(40294627-40294712)
chr3 (64-143)||(50518604-50518683)
chr3 (61-143)||(30996012-30996094)
chr3 (62-135)||(27763741-27763814)
chr3 (333-384)||(42455088-42455140)
chr3 (77-125)||(11767140-11767188)
[»] scaffold0182 (1 HSPs)
scaffold0182 (55-143)||(26343-26431)
[»] chr8 (11 HSPs)
chr8 (55-143)||(4125065-4125153)
chr8 (55-143)||(13468786-13468874)
chr8 (55-143)||(30936016-30936104)
chr8 (77-143)||(2743945-2744011)
chr8 (77-145)||(4321567-4321635)
chr8 (55-143)||(36994541-36994629)
chr8 (55-143)||(44638995-44639083)
chr8 (55-141)||(19715767-19715853)
chr8 (22-143)||(15682941-15683062)
chr8 (54-146)||(10030967-10031059)
chr8 (102-146)||(33196239-33196283)
[»] chr5 (12 HSPs)
chr5 (55-143)||(10591939-10592027)
chr5 (287-384)||(17886844-17886938)
chr5 (303-363)||(18400850-18400910)
chr5 (327-366)||(25487424-25487463)
chr5 (80-143)||(28023509-28023572)
chr5 (55-141)||(18909342-18909428)
chr5 (77-143)||(30785049-30785115)
chr5 (61-118)||(3525901-3525958)
chr5 (37-98)||(41446675-41446736)
chr5 (71-143)||(22188053-22188125)
chr5 (27-135)||(35774605-35774713)
chr5 (51-91)||(36212960-36213000)
[»] chr4 (8 HSPs)
chr4 (55-143)||(31307107-31307195)
chr4 (77-143)||(45994534-45994600)
chr4 (51-104)||(4709995-4710048)
chr4 (55-143)||(14854617-14854705)
chr4 (55-143)||(38766101-38766189)
chr4 (20-138)||(47023419-47023537)
chr4 (103-135)||(13686621-13686653)
chr4 (327-359)||(45994824-45994856)


Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Original strand, 2870979 - 2871489
Alignment:
Q  18 acttgcagggattaattcatcgagttttgtagaacctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaa 117  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  2870979 acttgcaaggattaattcatcgaattttgtaggacctaaatgagcgacaaactctctccaagagttttaacattgttgcatgtctaaggatggattcaaa 2871078  T
Q  118 cccaggacattggttaagttagaagaaacacttttaaacatgaaccctagtataaaaatgaagacaagattttggaagtaaattatcatatagagaaaat 217  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2871079 cccagaaccttggttaagttagaagaaacacttttaaacatgaaccctagtataaaaatgaagacaagattttggaagtaaattatcatatagagaaaat 2871178  T
Q  218 ttatttctctttcacatgtcttctatcggtgtatacnnnnnnnacatttatatttaatgatttgttgtc----------------ttaaaagcacataag 301  Q
    ||||||||||||||||||||||||||| | ||||||       |||||||||||||||||||| |||||                 ||||| || |||||    
T  2871179 ttatttctctttcacatgtcttctatctgggtatactttttttacatttatatttaatgatttattgtcacattaattagtgaatataaaaacatataag 2871278  T
Q  302 ttgtcatattcattaataaatatgtcaacacattattaaatatatgtgtaaaataattttacatttcgatatatactaattaattctaaattaaatctat 401  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2871279 ttgtcatatttattcataaagatgtcaacacattattaaatatatgtgtaaaataattttacatttcgatatatactaattaattctaaattaaatctat 2871378  T
Q  402 attgaattatcaagtagaaaaatgatattctccaaagacatactatatgtttggctggcatgcatgcaagggtacttaaccattaaatacaaacatgtga 501  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2871379 attgaattatcaagtagaaaaatgatattctgcaaagacatactatatgtttggctggcatgcatgcaagggtacttaaccattaaatacaaacatgtga 2871478  T
Q  502 aacctattcat 512  Q
    |||||||||||    
T  2871479 aacctattcat 2871489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 31492207 - 31492115
Alignment:
Q  51 acctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||||||| ||||||  ||||| | ||||||||||||| |  |||||| | |||| |||||||||||||||||| ||||||||| |||||||    
T  31492207 acctaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 31492115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 29059905 - 29059817
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| ||||||  ||||| | ||||||||||||| |  |||||| | |||| |||||||||||||||||| ||||||||| |||||||    
T  29059905 aaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 29059817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 19477297 - 19477378
Alignment:
Q  62 cggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||||| ||||| | ||||||||||||| | ||||||| | |||| ||||||| ||||||| || ||||||||| |||||||    
T  19477297 cggcaagctctccctaagagttttaacactgttgcatgcccaaggctggattcaaacccagaaccttggttaagctagaaga 19477378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 13254138 - 13254230
Alignment:
Q  51 acctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||||||| ||||||  ||||| | |||||||| |||  |  |||||| |||||| ||||||||||| |||||| ||||||||| |||||||    
T  13254138 acctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttggttaagctagaaga 13254230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 28537490 - 28537402
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| ||||||  ||||| | |||||||||||| || ||||||| | |||| ||||||||||||||  || ||| |||||||||||||    
T  28537490 aaatgggcggcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaaga 28537402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 37900423 - 37900491
Alignment:
Q  66 aaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaa 134  Q
    |||||||  |||||||||||||||||  ||||||||||||| | |||| ||||||| ||| ||||||||    
T  37900423 aaactcttcccaagagttttaacattgctgcatgtctaaggtttgatttgaacccatgactttggttaa 37900491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 37906934 - 37907002
Alignment:
Q  66 aaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaa 134  Q
    |||||||  |||||||||||||||||  ||||||||||||| | |||| ||||||| ||| ||||||||    
T  37906934 aaactcttcccaagagttttaacattgctgcatgtctaaggtttgatttgaacccatgactttggttaa 37907002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 24512713 - 24512638
Alignment:
Q  68 actctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||||| |||||||||||||| || ||| ||||| |||| || |||||||  |||||||||||||||  |||||||    
T  24512713 actctccccaagagttttaacgttgttggatgtccaaggttgtattcgaattcaggacattggttaaactagaaga 24512638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 8839344 - 8839410
Alignment:
Q  77 aagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||||||||||  |  |||||| | |||| |||||||||||||||||| ||||||||| |||||||    
T  8839344 aagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 8839410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 21222860 - 21222926
Alignment:
Q  298 taagttgtcatattcattaataaatatgtcaacacattattaaatatatgtgtaaaataattttaca 364  Q
    |||||||||||||||||||||  || |||||||| || |||| || |||||||||||| ||| ||||    
T  21222860 taagttgtcatattcattaattgatgtgtcaacatatcattagatttatgtgtaaaatgattgtaca 21222926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 30614719 - 30614756
Alignment:
Q  51 acctaaatgagcggcaaactctctccaagagttttaac 88  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  30614719 acctaaatgagcgacaaactctctctaagagttttaac 30614756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 31426711 - 31426743
Alignment:
Q  327 caacacattattaaatatatgtgtaaaataatt 359  Q
    ||||||||||||| |||||||||||||||||||    
T  31426711 caacacattattagatatatgtgtaaaataatt 31426743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 21910309 - 21910217
Alignment:
Q  51 acctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||||||||||||||| |||||||| ||||||||||||  | ||||||| | |||| |||||||||||||||||  ||||||||| |||||||    
T  21910309 acctaaatgagcggcagactctctctaagagttttaacgatgttgcatgcccaaggctggattcgaacccaggatcttggttaagctagaaga 21910217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 5944960 - 5944854
Alignment:
Q  37 tcgagttttgtagaacctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagt 136  Q
    |||||| |||||| | ||||||| ||||||||||||| | || |||||||||| | || |||||| |||  || |||||||| |||||| ||||||||||    
T  5944960 tcgagtattgtaggatctaaatgggcggcaaactctccctaaaagttttaacaatgttacatgtcaaagactgaattcgaactcaggaccttggttaagt 5944861  T
Q  137 tagaaga 143  Q
    || ||||    
T  5944860 taaaaga 5944854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 12411249 - 12411160
Alignment:
Q  54 taaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||||| |||||| |||||  | ||||||||||||  |  |||||| | |||| ||||||||||| |||||| |||||||||||||||||    
T  12411249 taaatgggcggcagactcttcctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttggttaagttagaaga 12411160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 3237998 - 3237927
Alignment:
Q  77 aagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaagaaacac 148  Q
    |||||||||||||||| || ||||  |||| |||||||||||| ||||  |||||||| |||||||| ||||    
T  3237998 aagagttttaacattactgaatgttcaaggctggattcgaaccaaggatcttggttaaattagaagagacac 3237927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 28933249 - 28933158
Alignment:
Q  44 ttgtagaacctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaag 135  Q
    |||| ||||| ||||| ||||||||||||||| |||| |||||||  | |||||||||||||| || |||| ||  |||||| || ||||||    
T  28933249 ttgtggaacccaaatgggcggcaaactctctctaagaattttaacgatgttgcatgtctaaggctgaattcaaaatcaggactttagttaag 28933158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 15614670 - 15614702
Alignment:
Q  111 attcgaacccaggacattggttaagttagaaga 143  Q
    ||||||||||| |||||||||||||||||||||    
T  15614670 attcgaacccatgacattggttaagttagaaga 15614702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 11080 - 10973
Alignment:
Q  27 gattaattcatcgagttttgtagaacctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggaca 126  Q
    |||||||  ||||||||||||  |||||||||| |||||||||||||   ||||||||||||||| ||||||| | ||  ||||||||||||| |||||     
T  11080 gattaatctatcgagttttgtgaaacctaaatgggcggcaaactctccgtaagagttttaacattgttgcatgcccaaaaatggattcgaacctaggacc 10981  T
Q  127 ttggttaa 134  Q
    || |||||    
T  10980 ttagttaa 10973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 37568790 - 37568859
Alignment:
Q  77 aagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaagaaac 146  Q
    ||||||||||||| |  |||||| |||||| |||||||||||||||||| ||||||||| ||||||||||    
T  37568790 aagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaac 37568859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 18105425 - 18105491
Alignment:
Q  77 aagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||| ||||||| || ||||||| | |||| |||||||||||||||||| ||||||||| |||||||    
T  18105425 aagaattttaacgttgttgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 18105491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 13292916 - 13292953
Alignment:
Q  327 caacacattattaaatatatgtgtaaaataattttaca 364  Q
    |||||||||||||||||||||| |||||||||||||||    
T  13292916 caacacattattaaatatatgtttaaaataattttaca 13292953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 31579269 - 31579358
Alignment:
Q  54 taaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||||| |||||| |||||| | || |||||||||| | ||||||| | |||| |||||||||||||| ||| ||| ||||| |||||||    
T  31579269 taaatgggcggcagactctccctaaaagttttaacactgttgcatgcccaaggctggattcgaacccaagaccttgattaagctagaaga 31579358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 5394496 - 5394409
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| ||||||  ||||| | ||||||||||||||  | ||||| | |||| |||||||||||||||||| ||||||||| |||||||    
T  5394496 aaatgggcggcaggctctccctaagagttttaacatgct-gcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 5394409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 17627659 - 17627571
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| || ||||||| || | |||| ||||||| || ||||||| | |||| ||||||||||| |||||| |||||||| ||||||||    
T  17627659 aaatgggcagcaaactttccctaagaattttaacgttgttgcatgcccaaggctggattcgaactcaggaccttggttaaattagaaga 17627571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 17672731 - 17672643
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| || |||||||||| | |||| ||||||| || ||||||| | |||| ||||||||||| |||||| |||||||| || |||||    
T  17672731 aaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggttggattcgaactcaggaccttggttaaatttgaaga 17672643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 12133260 - 12133359
Alignment:
Q  44 ttgtagaacctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||||| ||| |||||  |||||  ||||| | |||||||||||| ||  |||||||| |||| |||||||||||||| ||| ||| ||||| |||||||    
T  12133260 ttgtaggacccaaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaaga 12133359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 42745170 - 42745237
Alignment:
Q  68 actctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaag 135  Q
    |||||| | |||||||||||||||  |||||| | |||| |||||||||||||| ||| |||||||||    
T  42745170 actctccctaagagttttaacattgctgcatgcccaaggctggattcgaacccaagaccttggttaag 42745237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 44732636 - 44732694
Alignment:
Q  77 aagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaag 135  Q
    ||||||||||||| |  |||||| | |||| |||||||||||||||||| |||||||||    
T  44732636 aagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaag 44732694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 44752217 - 44752323
Alignment:
Q  37 tcgagttttgtagaacctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagt 136  Q
    |||||| |||||||||| ||||  | ||||| ||||| | |||||||||||| || ||||||| | |||  | |||||||||| ||||  |||||||||     
T  44752217 tcgagtattgtagaacccaaattggtggcaagctctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaacctaggagtttggttaagc 44752316  T
Q  137 tagaaga 143  Q
    |||||||    
T  44752317 tagaaga 44752323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 27671364 - 27671295
Alignment:
Q  290 aaagcacataagttgtcatattcattaataaatatgtcaacacattattaaatatatgtgtaaaataatt 359  Q
    ||||||||| |||| | ||||||||||||  || || ||||||||||| | ||| |||||||||||||||    
T  27671364 aaagcacatgagttattatattcattaatttatgtgacaacacattatcagataaatgtgtaaaataatt 27671295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 38464037 - 38463969
Alignment:
Q  73 ctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaa 141  Q
    ||||||||||||||||  | ||||||| | |||| |||||||||| | || || |||||||||||||||    
T  38464037 ctccaagagttttaacggtgttgcatgcccaaggctggattcgaatctagaactttggttaagttagaa 38463969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 35692589 - 35692506
Alignment:
Q  51 acctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaa 134  Q
    ||||||||||||||||||||||| | |||||||||||| |  ||||||| | || | ||||||||||| || ||||||||||||    
T  35692589 acctaaatgagcggcaaactctccctaagagttttaacgtcgttgcatgcccaatgttggattcgaactcaagacattggttaa 35692506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 13546526 - 13546438
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| |||| ||||||||   ||||||||||||||| || ||||| ||||  |||||||||||||| ||| || ||||||||||||||    
T  13546526 aaatgggcggtaaactctccataagagttttaacattgttacatgtataagactggattcgaacccacgactttagttaagttagaaga 13546438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 31733742 - 31733824
Alignment:
Q  65 caaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaagaaaca 147  Q
    ||||||||| | ||||||||||||  |  |||||| |||| | || |||||||||||  ||||||||||||||||||||||||    
T  31733742 caaactctccctaagagttttaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaaca 31733824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 36982445 - 36982367
Alignment:
Q  65 caaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||||||| | |||||||||||| || |||||||||||||| || ||||||||||  ||| ||||||||  |||||||    
T  36982445 caaactctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaaga 36982367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 10303220 - 10303128
Alignment:
Q  49 gaacctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaa 141  Q
    |||||||||||| ||| ||| | | || |||||||||||| || |||||||||||| | ||||||||||| || ||| || |||||| |||||    
T  10303220 gaacctaaatgaacggtaaattttttctaagagttttaacgttgttgcatgtctaaagctggattcgaactcaagactttagttaagctagaa 10303128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 40019356 - 40019253
Alignment:
Q  39 gagttttgtagaacctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagtta 138  Q
    ||||||||| | || |||||||| | ||||||||| |||||||||||||| ||  ||||| || |||| || |||||||||||  || ||| ||||||||    
T  40019356 gagttttgtgggacttaaatgagtg-caaactctccccaagagttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagtta 40019258  T
Q  139 gaaga 143  Q
    |||||    
T  40019257 gaaga 40019253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 7343672 - 7343729
Alignment:
Q  302 ttgtcatattcattaataaatatgtcaacacattattaaatatatgtgtaaaataatt 359  Q
    |||||||||| ||||||  ||||| | | ||||||||||||| |||||||||||||||    
T  7343672 ttgtcatatttattaattgatatgactatacattattaaatacatgtgtaaaataatt 7343729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 25655312 - 25655393
Alignment:
Q  62 cggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||||||||||||| |||||||||||| ||  |||||| | || | |  |||||||||||| || ||| |||||||||||||    
T  25655312 cggcaaactctctctaagagttttaacgttgctgcatgcccaatgttaaattcgaacccagaaccttgattaagttagaaga 25655393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 24801470 - 24801402
Alignment:
Q  66 aaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaa 134  Q
    |||||||| | ||||||||||||| |  |||||| |||||| |||||||||||| ||||| || |||||    
T  24801470 aaactctccctaagagttttaacagtgctgcatgcctaaggctggattcgaaccaaggactttagttaa 24801402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 47210101 - 47210157
Alignment:
Q  300 agttgtcatattcattaataaatatgtcaacacattattaaatatatgtgtaaaata 356  Q
    |||||||||||||||||||  || || ||||| ||||||| || |||||||||||||    
T  47210101 agttgtcatattcattaatttatgtgacaacatattattagatgtatgtgtaaaata 47210157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 22288313 - 22288247
Alignment:
Q  77 aagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||||||||||||| ||||||||  |||| || |||||||| |||||| |||||||||||||||||    
T  22288313 aagagttttaacattgttgcatgttcaaggctgaattcgaactcaggactttggttaagttagaaga 22288247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 40294712 - 40294627
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttaga 140  Q
    ||||||||||||| || || | ||||||||||||||| |||||| || |||| ||||||||||| |||||| ||| ||||| ||||    
T  40294712 aaatgagcggcaagctttccctaagagttttaacattgttgcatatccaaggctggattcgaactcaggaccttgattaaggtaga 40294627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 50518604 - 50518683
Alignment:
Q  64 gcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||||||||||| |||||||| ||| || ||||||||| |||  || |||||||| || |||||| ||||||||||||||    
T  50518604 gcaaactctctctaagagtttcaacgttgttgcatgtccaagactgaattcgaacacatgacattagttaagttagaaga 50518683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 30996012 - 30996094
Alignment:
Q  61 gcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||||| |||||| | ||||||||||||  | ||||||| | ||||  ||||||||||||||||| ||||||||| |||||||    
T  30996012 gcggcagactctccctaagagttttaacgctgttgcatgcccaaggtcggattcgaacccaggaccttggttaagatagaaga 30996094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 27763814 - 27763741
Alignment:
Q  62 cggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaag 135  Q
    ||||| |||||| | ||||||||||||| | ||| ||| | |||| |||||||||||||||||| |||||||||    
T  27763814 cggcagactctccctaagagttttaacactgttgtatgcccaaggctggattcgaacccaggaccttggttaag 27763741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 42455088 - 42455140
Alignment:
Q  333 attattaaatatatgtgtaaaataattttacatt-tcgatatatactaattaa 384  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||| |||||||    
T  42455088 attattaaatatatgtgtaaaataatgttacattatcggtatataataattaa 42455140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 11767188 - 11767140
Alignment:
Q  77 aagagttttaacattattgcatgtctaaggatggattcgaacccaggac 125  Q
    ||||||||||| ||| ||||||| | |||||| ||||||||||||||||    
T  11767188 aagagttttaatattgttgcatgcccaaggatagattcgaacccaggac 11767140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 26431 - 26343
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| ||||||  ||||| | ||||||||||||| |  |||||| | |||| |||||||||||||||||| ||||||||| |||||||    
T  26431 aaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 26343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 4125065 - 4125153
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| ||||||  ||||| | ||||||||||||| |  |||||| | |||| | |||||||||||||||||||||||||| |||||||    
T  4125065 aaatgggcggcaggctctccctaagagttttaacagtgctgcatgcccaaggcttgattcgaacccaggacattggttaagctagaaga 4125153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 13468786 - 13468874
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| |||||| |||||||| ||||||||||||  |  | |||| | |||| |||||||||||||||||| ||||||||| |||||||    
T  13468786 aaatgggcggcagactctctctaagagttttaacgctgctacatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 13468874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 30936104 - 30936016
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| ||||||  ||||| | |||||||||||| ||  ||||||  ||||| ||||||||||| |||||| |||||||||||||||||    
T  30936104 aaatgggcggcaggctctccctaagagttttaacgttgctgcatgcttaaggctggattcgaactcaggaccttggttaagttagaaga 30936016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 2744011 - 2743945
Alignment:
Q  77 aagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||||||||||| |  |||||| | |||| |||||||||||||||||| ||||||||| |||||||    
T  2744011 aagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 2743945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 4321567 - 4321635
Alignment:
Q  77 aagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaagaaa 145  Q
    |||||||||||| ||||||||||||||||  ||||||| ||||||| || ||  ||||| |||||||||    
T  4321567 aagagttttaacgttattgcatgtctaagactggattcaaacccagaaccttacttaagctagaagaaa 4321635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 36994541 - 36994629
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| || ||||||||||   ||||||||||||  |  |||||||| |||| |||||||||||||||||| ||||||||  |||||||    
T  36994541 aaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcgaacccaggaccttggttaaactagaaga 36994629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 44639083 - 44638995
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| ||||||||||||| | |||||||||||| || |||||||   |||| ||||||| ||  |||||| ||| |||||||||||||    
T  44639083 aaatgtgcggcaaactctccctaagagttttaacgttgttgcatgctcaaggttggattcaaattcaggaccttgattaagttagaaga 44638995  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 19715767 - 19715853
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaa 141  Q
    ||||| ||||||| ||||| |  |||||||||||  |  |||||| | |||| |||||||||||||||||| ||||||||| |||||    
T  19715767 aaatgggcggcaagctctccctgagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaa 19715853  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 15683062 - 15682941
Alignment:
Q  22 gcagggattaattcatcgagttttgtagaacctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaaccca 121  Q
    |||| ||||||| | |||||  |||| | ||||||||| ||||||  ||||| | ||||||||||||  |  |||||| | |||| ||||||||||| ||    
T  15683062 gcagagattaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactca 15682963  T
Q  122 ggacattggttaagttagaaga 143  Q
    |||| ||| ||||| |||||||    
T  15682962 ggaccttgattaagctagaaga 15682941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 10031059 - 10030967
Alignment:
Q  54 taaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaagaaac 146  Q
    |||||| ||||||| ||||| | |||||||||||| || ||| ||||| || |   ||||||||| ||| |  ||||||||||||||||||||    
T  10031059 taaatgggcggcaagctctccctaagagttttaacgttgttggatgtccaatgcaagattcgaactcagaattttggttaagttagaagaaac 10030967  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 33196239 - 33196283
Alignment:
Q  102 taaggatggattcgaacccaggacattggttaagttagaagaaac 146  Q
    ||||| ||||||| ||| |||||||||| ||||||||||||||||    
T  33196239 taaggttggattcaaactcaggacattgattaagttagaagaaac 33196283  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 10592027 - 10591939
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| |||||| |||||| | ||||||||||||| |  |||||| | |||| |||||||||||||||||| ||||||||  |||||||    
T  10592027 aaatgggcggcagactctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaatctagaaga 10591939  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 384
Target Start/End: Original strand, 17886844 - 17886938
Alignment:
Q  287 ttaaaagcacataagttgtcatattcattaataaatatgtcaacacattattaaatatatgtgtaaaataattttacatttcgatatatactaattaa 384  Q
    |||||||||||||  ||||||||||||||||| | |||   || | ||||||| || |||||||||||||||||||||||  ||| ||||||||||||    
T  17886844 ttaaaagcacatactttgtcatattcattaatga-tattataatatattattagatgtatgtgtaaaataattttacatt--gatgtatactaattaa 17886938  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 18400850 - 18400910
Alignment:
Q  303 tgtcatattcattaataaatatgtcaacacattattaaatatatgtgtaaaataattttac 363  Q
    ||||||||||||||||  |||||  |||||||||||||||| |||||| |||||| |||||    
T  18400850 tgtcatattcattaattgatatggtaacacattattaaatacatgtgttaaataactttac 18400910  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 366
Target Start/End: Original strand, 25487424 - 25487463
Alignment:
Q  327 caacacattattaaatatatgtgtaaaataattttacatt 366  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  25487424 caacacattattgaatatatgtgtaaaataatattacatt 25487463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 28023509 - 28023572
Alignment:
Q  80 agttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||||||||| || |  ||| |||||| ||||||||||| |||||||||||||||| |||||||    
T  28023509 agttttaacactactatatgcctaaggctggattcgaactcaggacattggttaagctagaaga 28023572  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 18909342 - 18909428
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaa 141  Q
    |||||||||||||| |||| | ||||||||||||| |  |||||  | |||| |||||||||||| ||||| ||| ||||| |||||    
T  18909342 aaatgagcggcaaattctccctaagagttttaacactgctgcatacccaaggctggattcgaacctaggaccttgattaagctagaa 18909428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 30785049 - 30785115
Alignment:
Q  77 aagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||||||||||| ||  |||||||| || | |||||||||||||| ||||||| ||||| |||||||    
T  30785049 aagagttttaacgttgctgcatgtccaaagctggattcgaacccaagacattgattaagctagaaga 30785115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 3525901 - 3525958
Alignment:
Q  61 gcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaac 118  Q
    ||||||||||||| | || |||||||||| | |||||||||||||  |||||||||||    
T  3525901 gcggcaaactctccctaaaagttttaacaatgttgcatgtctaagagtggattcgaac 3525958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 41446675 - 41446736
Alignment:
Q  37 tcgagttttgtagaacctaaatgagcggcaaactctctccaagagttttaacattattgcat 98  Q
    |||||| |||| | ||| |||||||||| |||||||||  |||||||||||||||| |||||    
T  41446675 tcgagtcttgtgggacccaaatgagcggtaaactctctgtaagagttttaacattactgcat 41446736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 22188053 - 22188125
Alignment:
Q  71 ctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||||||||||||||||  | ||| ||| | |||| ||||||| ||||||  || |||||||||||||||||    
T  22188053 ctctccaagagttttaacgctgttgtatgcccaaggctggattcaaacccaataccttggttaagttagaaga 22188125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 35774713 - 35774605
Alignment:
Q  27 gattaattcatcgagttttgtagaacctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggaca 126  Q
    |||||||||||||||| ||||   ||  ||||| ||||||| ||||| | ||| ||||||||||| ||||||||| |||| |  |||||||| || |||     
T  35774713 gattaattcatcgagtattgtgagactcaaatgtgcggcaagctctccctaagtgttttaacattgttgcatgtccaaggctaaattcgaactcaagact 35774614  T
Q  127 ttggttaag 135  Q
    || ||||||    
T  35774613 ttagttaag 35774605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 36213000 - 36212960
Alignment:
Q  51 acctaaatgagcggcaaactctctccaagagttttaacatt 91  Q
    ||||||||| ||||||||||||| | |||||||||||||||    
T  36213000 acctaaatgggcggcaaactctccctaagagttttaacatt 36212960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 31307107 - 31307195
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| ||||||  ||||| | ||||||||||||| |  |||||| | |||| |||||||||||||||||| ||||||||| |||||||    
T  31307107 aaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 31307195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 45994600 - 45994534
Alignment:
Q  77 aagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    |||||||||||| || ||||||| | |||| |||||||||| ||||||| ||||||||| |||||||    
T  45994600 aagagttttaacgttgttgcatgcccaaggctggattcgaatccaggaccttggttaagctagaaga 45994534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 4709995 - 4710048
Alignment:
Q  51 acctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaa 104  Q
    ||||||||||| ||||||||||||| |||||||||||| || ||||||| ||||    
T  4709995 acctaaatgagtggcaaactctctctaagagttttaacgttgttgcatgcctaa 4710048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 14854705 - 14854617
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| ||||||| ||||| | ||||||||||||  |  |||||| | |||| ||||||||||||||| || ||||||||| |||||||    
T  14854705 aaatgggcggcaagctctccctaagagttttaacgatgctgcatgcccaaggctggattcgaacccagaaccttggttaagctagaaga 14854617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 38766189 - 38766101
Alignment:
Q  55 aaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacccaggacattggttaagttagaaga 143  Q
    ||||| |||||| |||||| | ||||||||||||  |  |||||| | |||| ||||||| |||||||||| ||||||||| |||||||    
T  38766189 aaatgggcggcagactctccctaagagttttaacgctgctgcatgcccaaggctggattcaaacccaggaccttggttaagctagaaga 38766101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 47023537 - 47023419
Alignment:
Q  20 ttgcagggattaattcatcgagttttgtagaacctaaatgagcggcaaactctctccaagagttttaacattattgcatgtctaaggatggattcgaacc 119  Q
    |||||| || |||| | |||||| |||| | ||| |||||  || ||||||||| | |||||||||||| || ||||||| |||||  |||||| |||||    
T  47023537 ttgcagagactaatccttcgagtcttgtgggacccaaatggacgacaaactctccctaagagttttaactttgttgcatgcctaagtctggattggaacc 47023438  T
Q  120 caggacattggttaagtta 138  Q
     ||||| |||||| |||||    
T  47023437 aaggaccttggttgagtta 47023419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 13686653 - 13686621
Alignment:
Q  103 aaggatggattcgaacccaggacattggttaag 135  Q
    ||||||||||||||||||||||| |||||||||    
T  13686653 aaggatggattcgaacccaggaccttggttaag 13686621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 45994824 - 45994856
Alignment:
Q  327 caacacattattaaatatatgtgtaaaataatt 359  Q
    |||||||||||| ||||||||||||||||||||    
T  45994824 caacacattatttaatatatgtgtaaaataatt 45994856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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