View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_12 (Length: 511)
Name: NF3726_low_12
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_12 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 103 - 511
Target Start/End: Original strand, 49271135 - 49271545
Alignment:
| Q |
103 |
gaaaggtggtgggaatagcatctatttacatgtcaggtggtaaaa-aagacttagttttataattagtaatagaattctcgcctgataatacaagttggt |
201 |
Q |
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| T |
49271135 |
gaaaggtggtgggaatagcatctatttacatgtcaggtggtaaaaaaagacttagttttataattagtaatagaattctcgcctgataatacaagttggt |
49271234 |
T |
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| Q |
202 |
acatcacaattaacatgtgattattgtttatttgatttttaataatctcaagtgctacatattcaaatatttacccacaacaaaaggcaaaaccgtatca |
301 |
Q |
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| T |
49271235 |
acatcacaattaacatgtgattattgtttatttgatttttaataatctcaagttctacatattcaaatatttacccacaacaaaaggcaaaaccgtatca |
49271334 |
T |
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| Q |
302 |
aacctgtgcttttctatcagttttcattttcagcacttgtttaaaccatagtgctggaagatatggaaaaaggtttgtcaaagaaagac-aaagagggag |
400 |
Q |
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| T |
49271335 |
aacctgtgcttttctatcagttttcattttcagcacttgtttaaaccatagtgctggaagatatggaaaaaggtttgtcaaagaaagacaaaagagggag |
49271434 |
T |
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| Q |
401 |
aggatggttcaggcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattt |
500 |
Q |
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| T |
49271435 |
aggatggttcaggcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattt |
49271534 |
T |
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| Q |
501 |
tctacaaatta |
511 |
Q |
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| T |
49271535 |
tctacaaatta |
49271545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 362 - 511
Target Start/End: Original strand, 49254728 - 49254877
Alignment:
| Q |
362 |
atatggaaaaaggtttgtcaaagaaagacaaagagggagaggatggttcagg---catatcatggggtgtgtttgttcaagaggtagaagatgttggttt |
458 |
Q |
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| T |
49254728 |
atatggaaaaaggtttgttagagaaagacagagagggtgc---tggttcaagaagcataacatggggtgtattttttcaagaggtgaaagatgtttgttt |
49254824 |
T |
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| Q |
459 |
tctagctttgcctatgattagtgtaactttgtcacaatattttctacaaatta |
511 |
Q |
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| T |
49254825 |
tctagcattgcctatgattagtgtaactttgtcacaatattttctacaaatta |
49254877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 449 - 511
Target Start/End: Complemental strand, 49274761 - 49274699
Alignment:
| Q |
449 |
atgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaatta |
511 |
Q |
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| T |
49274761 |
atgttggttttctagctttgcctatgactagtgtaactttgtcacaatattttctacaaatta |
49274699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 413 - 511
Target Start/End: Original strand, 49267041 - 49267139
Alignment:
| Q |
413 |
gcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaatta |
511 |
Q |
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| T |
49267041 |
gcataacatggggtgtattttttcaagaggtgaaagatgtttgttttctagctctgcctatgatcgccgtcactctgtcacaatattttctacaaatta |
49267139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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