View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_123 (Length: 249)
Name: NF3726_low_123
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_123 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 44987927 - 44987696
Alignment:
| Q |
1 |
ttaataaattaaaaagtcaaactttgggacattgaactt-gtgtcagagtgaaaaacagatccaaatcggtacaacatagttggcaactaattttgaaca |
99 |
Q |
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| T |
44987927 |
ttaataaattaaaaagtcaaactttgggacattgaactttgtgtcagagtgaaaaacagatccaaatcggtacaacatagttggcaactaattttgaaca |
44987828 |
T |
|
| Q |
100 |
aagtgcttgtagagtagttgcaaaaagtggcaaagattaactgttttatcaaaactaaatacgatg-----atgtcatgtgatgatgatgtttgttacct |
194 |
Q |
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| T |
44987827 |
aagtgctt-----gtagttgcaaaaagtggcaaagattaactgttttatcaaaattaaatacgatgatgtcatgtcatgtgatgatgatgtttgttacct |
44987733 |
T |
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| Q |
195 |
tagaagaagggtcccggctttcaacaagagttctcat |
231 |
Q |
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| T |
44987732 |
tagaagaagggtcccggctttcaacaagagttctcat |
44987696 |
T |
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