View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_126 (Length: 248)
Name: NF3726_low_126
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_126 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 44489166 - 44489407
Alignment:
| Q |
1 |
tgaataagagacaatatgcatttttcagattaatgagactagactgattagtagtatgtgcaaatacctaatcaccataaagacaagctgcaattctcca |
100 |
Q |
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| T |
44489166 |
tgaataagagacaatatgcatttttcagattaatgagactagactgattagtagtatgtgcaaatacctaatcaccataaagacaagctgcaattctcca |
44489265 |
T |
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| Q |
101 |
gcatatacaacagatcaaatcagtcttttatttggagatgatcttggctctaaggttcttttatgtactcattcacaattttaaaatacttgaatgattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489266 |
gcatatacaacagatcaaatcagtcttttatttggagatgatcttggctctaaggttcttttatgtactcattcacaattttaaaatacttgaatgattt |
44489365 |
T |
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| Q |
201 |
tagtaaaaatactttacttaactagttatgtattatattctt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44489366 |
tagtaaaaatactttacttaactagttatgtattattttctt |
44489407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 44495345 - 44495424
Alignment:
| Q |
83 |
acaagctgcaattctccagcatatacaacagatcaaatcagtcttttatttggagatgatcttggctctaaggttctttt |
162 |
Q |
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||||||||| ||||||| ||||||||||||| ||||||| ||| ||||||||||| || ||||||| |||||||||| |
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| T |
44495345 |
acaagctgccgttctccacaatatacaacagatagaatcagtatttcatttggagatgctcatggctctgaggttctttt |
44495424 |
T |
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