View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_129 (Length: 243)
Name: NF3726_low_129
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_129 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 9587238 - 9587348
Alignment:
| Q |
1 |
ctccttagatattgcccaatcaacatcttctttttggactttgcatcctacctgccgattctcattcccttatttaaatcattttaaatttcatcatgtt |
100 |
Q |
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| T |
9587238 |
ctccttagatattgcccaatcaacatcttctttttggactttgcatcctacctgccgattctcattcccttatttaaatcattttaaatttcatcatgtt |
9587337 |
T |
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| Q |
101 |
acataaagtaa |
111 |
Q |
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| T |
9587338 |
acataaagtaa |
9587348 |
T |
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Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 9587361 - 9587450
Alignment:
| Q |
138 |
acattaaactatataatcttaaccatattctatatttacactattttccatcaccctataaatactcaactatataactcatgctttctt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9587361 |
acattaaactatataatcttaaccatattctatatttacactattttccatcaccctataaatactcaactatataactcatgctttctt |
9587450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 55938852 - 55938917
Alignment:
| Q |
12 |
ttgcccaatcaacatcttctttttggactttgcatcctacctgccgattctcattcccttatttaa |
77 |
Q |
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| T |
55938852 |
ttgcccaatcaacttcttccttttggacttttcaccttagctgccgattctcattcctttttttaa |
55938917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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