View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_13 (Length: 507)
Name: NF3726_low_13
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 14259807 - 14260038
Alignment:
| Q |
16 |
gtattctccatggtcattttgtggatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggtggtttttcttggaaagatcaagta |
115 |
Q |
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| T |
14259807 |
gtattctccatgatcattttgtggatgacttgaacgattttatactatctggatcttctgacaatgcatgtgtggtagtttttcttggaaagatcaagtt |
14259906 |
T |
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| Q |
116 |
atggaa----atgtaattaacaaatttcacaatttcactaaaaaaggttaaaactcatagctaatgtatttaattaaatccaggga-acccacttttcag |
210 |
Q |
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|||||| | |||||||||| |||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||| |||||| ||| || ||||| |
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| T |
14259907 |
atggaaaggtaagtaattaacagatttcacaattttactaacaaaggttaagactcatatctaatgtatttaattaaattcagggatacctaccgttcag |
14260006 |
T |
|
| Q |
211 |
aatcacggtaatcataccaagatgttattcaa |
242 |
Q |
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||||||||| | ||||||||||||||||||| |
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| T |
14260007 |
aatcacggtgcttataccaagatgttattcaa |
14260038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 14265335 - 14265447
Alignment:
| Q |
16 |
gtattctccatggtcattttgtggatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggtggtttttcttggaaagatcaagta |
115 |
Q |
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| T |
14265335 |
gtattcttcatgaccattttgtagatgacttgaccgattttatactat--ggatcttttgacaattcacgtgtggtggtttttcttggaaagatcgagtt |
14265432 |
T |
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| Q |
116 |
atggaaatgtaatta |
130 |
Q |
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| T |
14265433 |
atggaaatgtaatta |
14265447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 22146163 - 22145934
Alignment:
| Q |
16 |
gtattctccatggtcattttgtggatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggtggtttttcttggaaagatcaagta |
115 |
Q |
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| T |
22146163 |
gtattctccatggccgttttgtggatgacttcaccgattttatactatcaggatcttctgacaatgcatgtgtggtagttttccttggaaagatcaaatt |
22146064 |
T |
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| Q |
116 |
atggaaatgtaattaacaaatttcacaatttcact--aaaaaaggttaaaactcatagctaatgtatttaattaaatccaggga-acccacttttcagaa |
212 |
Q |
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|||| || |||||||||||||||||||| | | | |||||| |||||||||| ||||||| |||||| |||||||||| | ||| ||| ||||| | |
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| T |
22146063 |
atggtaaggtaattaacaaatttcacaaatccggtaaaaaaaaaattaaaactcaaagctaatatatttaggtaaatccaggcatacctactattcagga |
22145964 |
T |
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| Q |
213 |
tcacggtaatcataccaagatgttattcaa |
242 |
Q |
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| T |
22145963 |
tcacgataattataccaagatgttattcaa |
22145934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 406 - 498
Target Start/End: Complemental strand, 28537037 - 28536945
Alignment:
| Q |
406 |
agatgaagttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctttgatcctctatttatattccatacctttatagtataat |
498 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28537037 |
agatgaagttatggaaaatacaaatgcaatatgttcaaggaagcatttatgtctttgatcctctatttacattccatacctttatagtataat |
28536945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 35686936 - 35686850
Alignment:
| Q |
412 |
agttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctttgatcctctatttatattccatacctttatagtataat |
498 |
Q |
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| T |
35686936 |
agttatggaaaatacaaatgcaatacgtttaaggaagcatttatgtctttgatcctctatttatattccatacctttatagtataat |
35686850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 406 - 483
Target Start/End: Complemental strand, 7723136 - 7723059
Alignment:
| Q |
406 |
agatgaagttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctttgatcctctatttatattccata |
483 |
Q |
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||||||||| |||||||||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |
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| T |
7723136 |
agatgaagtgatggaaaatatgaatgcaatatgtttaaggaaacatttatgtctttgatcctatatttatattccata |
7723059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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