View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_low_139 (Length: 236)
Name: NF3726_low_139
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_139 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 41747358 - 41747155
Alignment:
| Q |
16 |
gaacaacgaactaacgaacttaactaattaattagtataactaacttttgcacctaataacttttctccattatgcagcaaactcaacattgatgaatcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41747358 |
gaacaacgaactaacgaacttaactaattaattagtataactaacttttgcacctaataacttttctccattatgcagcaaactcaacattgatgaatcc |
41747259 |
T |
|
| Q |
116 |
attgcaaccatgttgtgtgggagtgagttcaagttattattgtggaagtgtcgatgagaaaggagcaaagaaatatagtgtatgtgataagccagggctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41747258 |
attgcaaccatgttgtgtgggagtgagttcaagttattattgtggaagtgtcgatgagaaaggagcaaagaaatatagtgtatgtgataaaccagggctt |
41747159 |
T |
|
| Q |
216 |
tcat |
219 |
Q |
| |
|
|||| |
|
|
| T |
41747158 |
tcat |
41747155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 41753647 - 41753517
Alignment:
| Q |
89 |
tgcagcaaactcaacattgatgaatccattgcaaccatgttgtgtgggagtgagttcaagttattattgtggaagtgtcgatgagaaaggagcaaagaaa |
188 |
Q |
| |
|
||||| |||||||||| |||||||||||||| || | ||||||||||||| ||| | || ||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
41753647 |
tgcagaaaactcaacactgatgaatccattgaaagcgtgttgtgtgggagatggtttgaaaaataattgtggaagtgtggatgataaaggagaaaagaaa |
41753548 |
T |
|
| Q |
189 |
tatagtgtatgtgataagccagggctttcat |
219 |
Q |
| |
|
|||||||||||||| || |||| |||||||| |
|
|
| T |
41753547 |
tatagtgtatgtgagaaaccagagctttcat |
41753517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 41732615 - 41732503
Alignment:
| Q |
95 |
aaactcaacattgatgaatccattgcaaccatgttgtgtgggagtgagttcaagttattattgtggaagtgtcgatgagaaaggagcaaagaaatatagt |
194 |
Q |
| |
|
|||||||||| |||||||||| |||||||| |||||| ||||| | || | |||| |||||||||||| ||| | |||||||||| |||||||||| |
|
|
| T |
41732615 |
aaactcaacagtgatgaatccgttgcaaccgtgttgtaagggagaggatttgaaatatttttgtggaagtgttgataataaaggagcaaggaaatatagt |
41732516 |
T |
|
| Q |
195 |
gtatgtgataagc |
207 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
41732515 |
gtatgtgagaagc |
41732503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 41738650 - 41738618
Alignment:
| Q |
106 |
tgatgaatccattgcaaccatgttgtgtgggag |
138 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
41738650 |
tgatgaatccgttgcaaccatgttgtgtgggag |
41738618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University