View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_14 (Length: 502)
Name: NF3726_low_14
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 57 - 487
Target Start/End: Complemental strand, 31643630 - 31643202
Alignment:
| Q |
57 |
cgctctaggctcccacgatacgatttcaacccaatgcttattgtcatcgtcttcacttctgcatagaatagatgagnnnnnnnnggttatatagagagaa |
156 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
31643630 |
cgctctaggctcccacgatacgatttcaacccaacgcttattgtcatcgtcttcacttctgcatagaatagatcagaaaaaaa-ggttatatagagagaa |
31643532 |
T |
|
| Q |
157 |
aaacaaagcaaaagggaagatgactttgttgttgaattgaagaaaaacctgagattgttaatatgagtgatggagttgaggtgtttgggtttagggatac |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31643531 |
aaacaaagcaaaagggaagatgactttgttgttgaattgaagaaaaacctgagagtgttaatatgagtgatggagttgaggtgtttgggtttagggatac |
31643432 |
T |
|
| Q |
257 |
ggagagataagagaataagaaaaataatgaggaatatgaaggtgacaaacaaggtaaagatcaatgttcttgaagttggcagcaatggttttcgaggtcc |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31643431 |
ggagagataagagaataagaaaaataatgaggaatatgaaggtgacaaacaaggtaaagatcaatgttcttgaagttggcagcaatggtttttgaggtcc |
31643332 |
T |
|
| Q |
357 |
cacacgagagtgcttcagttttcccataacagtttgcaaagatagatgaatgaattgaaatgaaaaatgagaatgagaccttttaaatgttgatacttga |
456 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31643331 |
cacacgagagtgcttcaattttcccgtaacagtttgcaaagatagatgaatgaattgaaatgaaaaatgagaatgagaccttttaaatgttgatacttga |
31643232 |
T |
|
| Q |
457 |
tagtaaaaaacaaatgttgatacttgatagt |
487 |
Q |
| |
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| T |
31643231 |
ttgtaaaaaa-aaatgttgatacttgatagt |
31643202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 59 - 420
Target Start/End: Complemental strand, 31635654 - 31635291
Alignment:
| Q |
59 |
ctctaggctcccacgatacgatttcaacccaatgcttattgtcatcgtcttcacttctgcat----agaatagatgagnnnnnnnnggttatatagagag |
154 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||| | |||| | || ||| ||| |||||| |
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| T |
31635654 |
ctctaggctcccacgatacgatttcaacccaacgcttattgtcatcgtcatcgcgtctgcatgtgtaaaataaacaagaaagaga-ggtaataaagagag |
31635556 |
T |
|
| Q |
155 |
aaaaacaaagcaaaagggaagatgactttgttgttgaattgaagaaaaacctgagattgttaatatgagtgatggagttgaggtgtttgggtttagggat |
254 |
Q |
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|||| |||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31635555 |
aaaa-caaagcaaaaagaaagatatgtttgtagttgaattgaagaaaaacctgagattgttaatatgagtgatggagttgaggtgtttgggtttagggat |
31635457 |
T |
|
| Q |
255 |
acggagagataagagaataagaaaaataatgaggaatatgaaggtgacaaacaaggtaaagatcaatgttcttgaagttggcagcaatggttttcgaggt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31635456 |
acggagagataagagaataagaaaaataatgaggaatatgaaggtgacaaacaaggtaaagatcaatgttcttgaagttggcagcaatggttttcgaggt |
31635357 |
T |
|
| Q |
355 |
cccacacgagagtgcttcagttttcccataacagtttgcaaagatagatgaatgaattgaaatgaa |
420 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31635356 |
cccacacgagagtgcttcaattttcccataacagttttcaaagatagatgaatgaattgaaatgaa |
31635291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 277
Target Start/End: Complemental strand, 31650802 - 31650576
Alignment:
| Q |
58 |
gctctaggctcccacgatacgatttcaacccaatgcttattgtcatcgtcttcacttctgcat--------agaatagatgagnnnnnnnnggttatata |
149 |
Q |
| |
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||||||||||||||||||| ||||| ||||||| |||||||||||||||||||| |||||||| |||||| | ||| | | || | |
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| T |
31650802 |
gctctaggctcccacgatatgatttgaacccaacgcttattgtcatcgtcttcatttctgcatgcatgcatagaataaacgagaaaaagatg-tcgtaaa |
31650704 |
T |
|
| Q |
150 |
gagagaaaaacaaagcaaaagggaagatgactttgttgttgaattgaagaaaaacctgagattgttaatatgagtgatggagttgaggtgtttgggttta |
249 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||||| ||||||| ||||| |||||||||| ||||| |||||||||||||||| ||||| || |||||| |
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| T |
31650703 |
gagagaaaaacaaaacaaaaaggaagatgtgtttgtagttgaatggaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttggttta |
31650604 |
T |
|
| Q |
250 |
gggatacggagagataagagaataagaa |
277 |
Q |
| |
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|| ||||| |||| ||||| |||||||| |
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|
| T |
31650603 |
ggaatacgaagagttaagataataagaa |
31650576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 31629160 - 31629092
Alignment:
| Q |
58 |
gctctaggctcccacgatacgatttcaacccaatgcttattgtcatcgtcttcacttctgcatagaata |
126 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
31629160 |
gctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcatagaata |
31629092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 31654187 - 31654059
Alignment:
| Q |
149 |
agagagaaaaacaaagcaaaagggaagatgactttgttgttgaattgaagaaaaacctgagattgttaatatgagtgatggagttgaggtgtttgggttt |
248 |
Q |
| |
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||||||| ||||||| ||||| ||||||| | ||||| ||||||| |||| |||||||||| ||||| |||||||||||||||| ||||| || |||| |
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| T |
31654187 |
agagagagaaacaaatcaaaaaggaagataagtttgtagttgaatcaaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttagttt |
31654088 |
T |
|
| Q |
249 |
agggatacggagagataagagaataagaa |
277 |
Q |
| |
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||||||||| |||| ||||| |||||||| |
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| T |
31654087 |
agggatacgaagagttaagataataagaa |
31654059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 31654271 - 31654223
Alignment:
| Q |
58 |
gctctaggctcccacgatacgatttcaacccaatgcttattgtcatcgt |
106 |
Q |
| |
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||||||||||||||||||| ||||| ||||||| ||||||||||||||| |
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| T |
31654271 |
gctctaggctcccacgatatgatttgaacccaacgcttattgtcatcgt |
31654223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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