View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_147 (Length: 218)
Name: NF3726_low_147
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_147 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 33390930 - 33391117
Alignment:
| Q |
20 |
ttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttccttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33390930 |
ttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttccttt |
33391029 |
T |
|
| Q |
120 |
cattcttttctcaaattctagaagacctttaatttctctatcttctgcatttttcttcaccacccaaacaaaatctttcccctatgct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33391030 |
cattcttttctcaaattctagaagacctttaatttctctatcttctgcatttttcttcaccacccaaacaaaatctttccccgatgct |
33391117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 33383119 - 33383009
Alignment:
| Q |
25 |
ttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattc |
124 |
Q |
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|||||||||||||||||||||| ||||||||| |||| |||| ||||||||| ||| || ||||||||||||||||||||||||||||||| ||||| |
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| T |
33383119 |
ttccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttataattagtccctttccttccattc |
33383020 |
T |
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| Q |
125 |
ttttctcaaat |
135 |
Q |
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||||||||||| |
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| T |
33383019 |
ttttctcaaat |
33383009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 18989571 - 18989395
Alignment:
| Q |
20 |
ttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttccttt |
119 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||| |
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| T |
18989571 |
ttaagttccatccacaatgagtcacaaatgctccaatagctttatgttgaaaaatcaaaagttgaagaggccaacctcttataattagtccttttccttt |
18989472 |
T |
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| Q |
120 |
cattcttttctcaaattctagaagacctttaatttctctatcttctgcatttttcttcaccacccaaacaaaatctttcc |
199 |
Q |
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|||| |||||||||||||| | ||||||| |||||||||||||| ||||||||||||||| |||| |||||||||| |
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| T |
18989471 |
cattattttctcaaattctggtagacctt---tttctctatcttctctctttttcttcaccaccaaaactaaatctttcc |
18989395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 19001964 - 19001819
Alignment:
| Q |
61 |
ttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaagacctttaatttctctat |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | || ||||| | ||| ||| |
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| T |
19001964 |
ttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccgtttcctttcatccttttctcaaattctggtagtccttt-ttctctatat |
19001866 |
T |
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| Q |
161 |
cttctgcatttttcttcaccacccaaacaaaatctttcccctatgct |
207 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
19001865 |
cttctctctttttcttcaccacccaaacaaaatctttccccgatgct |
19001819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 27688702 - 27688804
Alignment:
| Q |
25 |
ttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattc |
124 |
Q |
| |
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|||||||| ||||| ||||||| ||| || || |||| ||||| |||||||| | ||| |||||||||||||||||||||||||| ||||||| | ||| |
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| T |
27688702 |
ttccatccgcaatgcgtcacaaatgccccgattgcttcatgttcaagaatcatcacttgtggagaccaacctcttataattagtccttttccttccgttc |
27688801 |
T |
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| Q |
125 |
ttt |
127 |
Q |
| |
|
||| |
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|
| T |
27688802 |
ttt |
27688804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 14710100 - 14710151
Alignment:
| Q |
26 |
tccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaa |
77 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| || ||| ||||| |
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| T |
14710100 |
tccaaccacaatgagtcacaattcctccaatagctttattttcaagtatcaa |
14710151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 17620215 - 17620164
Alignment:
| Q |
26 |
tccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaa |
77 |
Q |
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|||| |||||||||||||||||| ||||||||||||||| || ||| ||||| |
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| T |
17620215 |
tccaaccacaatgagtcacaattcctccaatagctttattttcaagtatcaa |
17620164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 12613729 - 12613691
Alignment:
| Q |
24 |
gttccatccacaatgagtcacaattgctccaatagcttt |
62 |
Q |
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|||||| |||||||||||||||||| ||||||||||||| |
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| T |
12613729 |
gttccaaccacaatgagtcacaattcctccaatagcttt |
12613691 |
T |
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