View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_153 (Length: 212)
Name: NF3726_low_153
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_153 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 52593288 - 52593404
Alignment:
| Q |
82 |
gtattattattacaaagagattaccttctatcacgcacaaataatatactactaccccatcataatcatttcatgatcacagacttttttaaaaaggaca |
181 |
Q |
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| T |
52593288 |
gtattattattacaaagagattaccttctatcacgcacaaacaatatactactaccccatcataatcatttcatgatcacagacttttttaaaaaggaca |
52593387 |
T |
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| Q |
182 |
aaataaagagagacata |
198 |
Q |
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| T |
52593388 |
aaataaagagagacata |
52593404 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 52593223 - 52593255
Alignment:
| Q |
15 |
ggcaacattcaactttttactagtcatgaaatt |
47 |
Q |
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| T |
52593223 |
ggcaacattcaactttttactagtcatgaaatt |
52593255 |
T |
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