View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_low_154 (Length: 207)
Name: NF3726_low_154
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_154 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 33388953 - 33389136
Alignment:
| Q |
15 |
gatgtagccttccaggaactttcataagaggtgctccnnnnnnntagctcttaaacttttcagcttcaagtgttgcactcataactaccaacttcaaatc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388953 |
gatgtagccttccaggaactttcataagaggggctccaaaaaaatagctcttaaacttttcagcttcaagtgttgcactcataactaccaacttcaaatc |
33389052 |
T |
|
| Q |
115 |
agttctatttctaagaatttccttaagaagaccaaataacaaatccgtagccaaagtcctttcatgtgcctcatcaagtataat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33389053 |
agttctatttctaagaatttccttaagaagaccaaataacaaatccgtagccaaagtcctttcatgtgcctcatcaagtataat |
33389136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 20816151 - 20815967
Alignment:
| Q |
15 |
gatgtagccttccaggaactttcataagaggtgctccnnnnnnntagctcttaaacttttcagcttcaagtgttgcactcataactaccaacttcaaatc |
114 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
20816151 |
gatgtagccttcctcgaactttcataagaggggctcccaaaaaatagctcttaaacttttcagcttcaagtgttgcactcataacaaccaacttcaagtc |
20816052 |
T |
|
| Q |
115 |
agttctatttctaagaatttccttaagaagaccaaataacaaatccgtagccaaagtcctttcatgtgcctcatcaagtataatc |
199 |
Q |
| |
|
| ||| ||| |||||| |||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20816051 |
gggtctgtttttaagaacttccttaagaaggccaaatagcacatctgtagccaaagtcctttcatgtgcctcatcaagaataatc |
20815967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 38779994 - 38780171
Alignment:
| Q |
15 |
gatgtagccttccaggaactttcataagaggtgctccnnnnnnntagctcttaaacttttcagcttcaagtgttgcactcataactaccaacttcaaatc |
114 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| || || |||| || ||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
38779994 |
gatgcagcctgccaggaactttcataagaggggcaccaaaaaaatagccctgaaacttttcagcttcaagtgttgcactcataaccaccaacttcaagtc |
38780093 |
T |
|
| Q |
115 |
agttctatttctaagaatttccttaagaagaccaaataacaaatccgtagccaaagtcctttcatgtgcctcatcaag |
192 |
Q |
| |
|
|| ||| ||| |||||| |||||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38780094 |
aggtctgtttttaagaacttccttgagaagaccaaatagcacatctgtagccaaagtcctttcatgtgcctcatcaag |
38780171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University