View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_155 (Length: 204)
Name: NF3726_low_155
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_155 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 37633918 - 37634113
Alignment:
| Q |
9 |
cttgaaattgttttagagaacaccggtcaagatatccgcagtcgaacgacaagatgtgtgtcgttgtgtgacgaggcatgcacgatgacgtatatagtat |
108 |
Q |
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| T |
37633918 |
cttgaaattgttttagagaacatcggtcaagatatccgcagtcaaacgacaagatgtgtgtcgttatgtgacgaggcatgcacgatgacgtatatagtat |
37634017 |
T |
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| Q |
109 |
ggagcgatcttataaaattatcgtactataattatttttcatttttatcatttgtgactaattttaattgattatatagtgaaaaaattagtatat |
204 |
Q |
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| T |
37634018 |
tgagcgatcttataaaattatcatactataattatttttcatttttatcatttgtgactaattttaattgattatatagtgaaaaaattagtatat |
37634113 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 53511635 - 53511683
Alignment:
| Q |
135 |
tataattatttttcatttttatcatttgtgactaattttaattgattat |
183 |
Q |
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| T |
53511635 |
tataatcatttttcatttttatcatttgtcactaattttaattaattat |
53511683 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 910825 - 910756
Alignment:
| Q |
135 |
tataattatttttcatttttatcatttgtgactaattttaattgattatatagtgaaaaaattagtatat |
204 |
Q |
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| T |
910825 |
tataatcatttttcatttttatcatttgctattaattttaattaattttgcagtgacaaaattattatat |
910756 |
T |
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