View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_18 (Length: 490)
Name: NF3726_low_18
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 28470360 - 28470691
Alignment:
| Q |
17 |
attactataaacgtgtacgaccagatctcaaattcacattcaacgtttcaacccacactccaacaataatcatgtgcaaaccatctttgttatgtacgga |
116 |
Q |
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| T |
28470360 |
attactataaacgtgtacgaccagatctcaaattcacattcaacgtttcaacccacactccaacaataatcatgtgcaaaccatctttgttatgtacgga |
28470459 |
T |
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| Q |
117 |
ttgattatcaataacnnnnnnnnnnnnnnnnnncaacatttaactaggatgttacaacctttgatggatcaatcatggcaacaattcaagttccattcat |
216 |
Q |
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| T |
28470460 |
ttgattatcaataacaaaaataaaattaaaaaacaacatttaactaggatgttacaacctttgatggatcaatcatggcaacaattcaagttccattcat |
28470559 |
T |
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| Q |
217 |
aaaattatagtgtgtttgagaccgcggtcagattgcttctaaagcgcatccaaccataagttatgattcgtagcttcaccattttctcgtccaaagtagc |
316 |
Q |
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| T |
28470560 |
aaaattatagtgtgtttgagaccgcggtcatattgcttctaacgcgcatccaaccataagttatgattcgtagcttcaccattttctcgtccaaagcagc |
28470659 |
T |
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| Q |
317 |
attgaaacgcaagaaagacaattcaagtgcac |
348 |
Q |
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| T |
28470660 |
attgaaacgcaagaaagacaattcgagtgcac |
28470691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 429 - 483
Target Start/End: Original strand, 28470814 - 28470868
Alignment:
| Q |
429 |
aggtaagaaaaagttttttacaattactcactcaaattacaaaccatgatgatgt |
483 |
Q |
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| T |
28470814 |
aggtaagaaaaagttttttacaattattcactcaaattacaaaccatgaagatgt |
28470868 |
T |
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