View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_20 (Length: 448)
Name: NF3726_low_20
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 26427946 - 26427523
Alignment:
| Q |
19 |
attgttacccttatcaacctattcaaactaccaacaactcagaaatcactacttttcaacatcatgaacaagaacaatttgtccaacaaaaccaccattt |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427946 |
attgttatccttatcaacctattcaaactaccaacaactcagaaatcactacttttcaacatcatgaacaagaacaatttgtccaacaaaaccaccattt |
26427847 |
T |
|
| Q |
119 |
ttcctctaactatttgaatgaaacttctcttttagatgaaagcttcatttttcaaactccttgtttttactcaactgaaacttaccctaacccttgtcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427846 |
ttcctctaactatttgaatgaaacttctcttttagatgaaagcttcatttttcaaactccttgtttttactcaactgaaacttaccctaacccttgtcaa |
26427747 |
T |
|
| Q |
219 |
gatgatcaactacttgttgactccactttttcttctcaaaatgatggcttcgtttcaatgaatgaaattttcccaaatgaggaagatttcaccaattacc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427746 |
gatgatcaactacttgttgactccactttttcttctcaaaatgatggcttcgtttcaatgaatgaaattttcccaaatgaggaagatttcaccaattacc |
26427647 |
T |
|
| Q |
319 |
tgacatgtccaaaacgccaaaagctatgctacgatgagaaaagagaggaaccacaacaagagcttttgaactcaactaannnnnnngtggatgagtttat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
26427646 |
tgacatgtccaaaacgccaaaagctatgctacgatgagaaaagagaggaaccacaacaagagcttttgaactcaaccaatttttttgtggatgagtttat |
26427547 |
T |
|
| Q |
419 |
gactaaccctaacccctttgcttc |
442 |
Q |
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| T |
26427546 |
gactaaccctaacccctttgcttc |
26427523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 208 - 433
Target Start/End: Original strand, 28009109 - 28009349
Alignment:
| Q |
208 |
acccttgtcaagatgatcaactacttgttgactccactttttcttctcaaaatgatggcttcgtttcaatgaatgaaattttcccaaatgaggaaga--- |
304 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
28009109 |
acccttgtcaagatcaacaactacttgttgactccactttttcttctcaaaatgatgactttgtttcaatgaatgaaattttcccaaatgaggaagattt |
28009208 |
T |
|
| Q |
305 |
---tttcaccaattac---ctgacatgtccaaaacgccaaaagc---tatgct---acgatgagaaaagagaggaaccacaacaagagcttttgaactca |
392 |
Q |
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||||| ||| ||| || ||||||||||||||||||||| ||| || | || ||||||||||| || |||||||||||||||||||||||| |
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| T |
28009209 |
cattttcaacaactaccagcttccatgtccaaaacgccaaaagctgatatactatgaggaggagaaaagagaagagccacaacaagagcttttgaactca |
28009308 |
T |
|
| Q |
393 |
actaannnnnnngtggatgagtttatgactaaccctaaccc |
433 |
Q |
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|| || ||||||||||| |||||||||||||||| |
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| T |
28009309 |
accaatttttttatggatgagtttgtgactaaccctaaccc |
28009349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 28008974 - 28009053
Alignment:
| Q |
19 |
attgttacccttatcaacctattcaaactaccaa---caactcagaaatcactacttttcaacatcatgaacaagaacaa |
95 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28008974 |
attgttacccttatcaacctactcaaactaccaataacaactcagaaatcaccacttttcaacatcatgaacaagaacaa |
28009053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 28009058 - 28009107
Alignment:
| Q |
127 |
actatttgaatgaaacttctcttttagatgaaagcttcatttttcaaact |
176 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28009058 |
actatttcaatgaagcttctcttttagatgaaagcttcatttttcaaact |
28009107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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