View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_21 (Length: 446)
Name: NF3726_low_21
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 2953593 - 2954007
Alignment:
| Q |
19 |
cttgacagcttgatgaaggtcttcaatcaaaggatttgctcgtttctcaccaatagagaacttttctcttcgtatctcttcaatgtgttccttctctgtg |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2953593 |
cttgacagcttgatgaagatcttcaatcaaaggatttgctcgtttctcaccaatagagaacttttctcttcgtatctcttcaatgtgttccttctctgtg |
2953692 |
T |
|
| Q |
119 |
gtcattttttccatatctcacttctcaaaatcaaaggtggcaaagtatccagctagtatagtgaagcacacactctctgaagtgtataagaaaatacaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2953693 |
gtcattttttccatatctcacttctcaaaatcaaaggtggcaaagtatccagctagtatagtgaagcacacactctctgaagtgtataagaaaatacaag |
2953792 |
T |
|
| Q |
219 |
aagatcatttatttagtagagaaaaaatatgtgttaaagttgtaagaacaactaagatgattgacaattgcaggaatgttaacatgtaggaatttgaatt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2953793 |
aagatcatttatttagtagagaaaaaatatgtgttaaggttgtaagaacaactaagatgattgacaattgcaggaatgttaacatgtaggaatttgaatt |
2953892 |
T |
|
| Q |
319 |
ccgacctaannnnnnnnataggtgtgtgtga--gtataataagttactaaatctatcaatggctgnnnnnnntaaaattaataacaaaagaattttgatt |
416 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2953893 |
ccgacctaattttttttataggtgtgtgtgatcgtataataagttactaaatctatcaatggctgaaaaaaataaaattaataacaaaagaattttgatt |
2953992 |
T |
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| Q |
417 |
ctcccttcactatat |
431 |
Q |
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| T |
2953993 |
ctcccttcactatat |
2954007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 3008097 - 3008049
Alignment:
| Q |
60 |
gtttctcaccaatagagaacttttctcttcgtatctcttcaatgtgttc |
108 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3008097 |
gtttcccaccaatagaaaacttttctcttcgtatctcttcaatgtgttc |
3008049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 2935370 - 2935500
Alignment:
| Q |
19 |
cttgacagcttgatgaaggtcttcaatcaaaggatttgctcgtttctcaccaatagagaacttttctcttcgtatctcttcaatgtgttccttctctgtg |
118 |
Q |
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|||||||||||| |||||||| ||| ||||||| |||| | || ||||||| |||||||||| |||||||||||||||||||||| |||| ||| |
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| T |
2935370 |
cttgacagcttggtgaaggtcctcagtcaaagggtttg---gattgccaccaatggagaactttttccttcgtatctcttcaatgtgttttttctgtgta |
2935466 |
T |
|
| Q |
119 |
gtcattttttccatatctcacttctcaaaatcaa |
152 |
Q |
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| T |
2935467 |
gccattttgctcatatctcaatcctcaaaatcaa |
2935500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 2925537 - 2925624
Alignment:
| Q |
20 |
ttgacagcttgatgaaggtcttcaatcaaaggatttgctcgtttctcaccaatagagaacttttctcttcgtatctcttcaatgtgttcctt |
111 |
Q |
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| T |
2925537 |
ttgacagcatgatgaagatcttcagtcaatggattag---gtttcccaccaatgga-aacttttttcttcgtatctcttctatgtgttcctt |
2925624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 4911656 - 4911580
Alignment:
| Q |
23 |
acagcttgatgaaggtcttcaatcaaaggatttgctcgtttctcaccaatagagaacttttct-cttcgtatctcttcaat |
102 |
Q |
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|||||||||||||| |||||||||||||| |||| ||||| | ||||||||||| |||||| ||||||||||||||||| |
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| T |
4911656 |
acagcttgatgaagatcttcaatcaaagggtttg---gtttcccgccaatagagaa-ttttctccttcgtatctcttcaat |
4911580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 27689486 - 27689451
Alignment:
| Q |
77 |
aacttttctcttcgtatctcttcaatgtgttccttc |
112 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
27689486 |
aacttttctcttcgtatttcttcaatgtgttccttc |
27689451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 8242145 - 8242105
Alignment:
| Q |
72 |
tagagaacttttctcttcgtatctcttcaatgtgttccttc |
112 |
Q |
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|||| |||||||||||| |||| |||||||||||||||||| |
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| T |
8242145 |
tagaaaacttttctctttgtatttcttcaatgtgttccttc |
8242105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 10134080 - 10134040
Alignment:
| Q |
72 |
tagagaacttttctcttcgtatctcttcaatgtgttccttc |
112 |
Q |
| |
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|||| |||||||||||| |||| |||||||||||||||||| |
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| T |
10134080 |
tagaaaacttttctctttgtatttcttcaatgtgttccttc |
10134040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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