View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_22 (Length: 441)
Name: NF3726_low_22
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Complemental strand, 38480767 - 38480351
Alignment:
| Q |
17 |
ctttctcctgacaaaaagaaattataatttttctttagatggcaaaagtcataagagaattatgtattggccttgaagaatgtttacctgtttcttgatc |
116 |
Q |
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| T |
38480767 |
ctttctcctgacaaaaagaaattataatttttctttagatggcaaaagtcataagagaattatgtattgtccttgaagaatgtttacctgtttcttgatc |
38480668 |
T |
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| Q |
117 |
tgaagtaactgctgctgtcaaaccaaccccagaagaaccccggcctgtagttgatatggccaagggagcaatattcataattgctctcaagagttgagac |
216 |
Q |
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| T |
38480667 |
tgaagtaactgctgctgtcaaaccaaccccagaagaaccccggccagtagttgatatggccaagggagcaatattcataattgctctcaagagttgagac |
38480568 |
T |
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| Q |
217 |
ttagcaacagagggatcaccaaccatcatcatattaatgtcactaaaagaagaaggcacaccagtattacaacttttgtaaacaatattaagagagataa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38480567 |
ttagcaacagagggatcaccaaccatcatcatattaatgtcactaaaagaagaaggcacaccagtattacaacttttgtaaacaatattaagagagataa |
38480468 |
T |
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| Q |
317 |
atgtcaagaatgtgttggactgcaataataccatcttccnnnnnnnctaagggatataatgatatatggggaaagcactaaccctctcaaatgagttcca |
416 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38480467 |
atttcaagaatgtgttggactgcaataataccatcttccaaaaaaactaagggatataatgatatatggggaaagcactaaccctctcaaatgagttcca |
38480368 |
T |
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| Q |
417 |
ttctttaggttcatctc |
433 |
Q |
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|||||||||||| |||| |
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| T |
38480367 |
ttctttaggttcttctc |
38480351 |
T |
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