View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_low_25 (Length: 432)

Name: NF3726_low_25
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_low_25
NF3726_low_25
[»] chr6 (3 HSPs)
chr6 (22-171)||(31900684-31900832)
chr6 (321-417)||(31925598-31925694)
chr6 (29-152)||(4739990-4740112)
[»] chr3 (2 HSPs)
chr3 (1-171)||(888486-888656)
chr3 (255-304)||(888740-888789)
[»] chr2 (1 HSPs)
chr2 (29-152)||(10453692-10453813)
[»] chr1 (3 HSPs)
chr1 (70-151)||(52937210-52937291)
chr1 (70-151)||(52944845-52944926)
chr1 (41-152)||(12603305-12603414)
[»] scaffold0238 (1 HSPs)
scaffold0238 (29-152)||(13528-13649)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 31900684 - 31900832
Alignment:
Q  22 tttctacaattttaatacgatattactacaccaaagtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagatt 121  Q
    |||||||||||||  |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31900684 tttctacaatttt--tacgatattactaccccaaagtcatttaaattggtatgtacaatgtcacaatacataaaactcacattaagctgcacttgagatt 31900781  T
Q  122 aactccaccttgagttttgtagcaac-aatgtttatttcttcttcgtctgc 171  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31900782 aactccaccttgagttttgtagcaacaaatgtttatttcttcttcgtctgc 31900832  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 321 - 417
Target Start/End: Original strand, 31925598 - 31925694
Alignment:
Q  321 aaacaaaactgcagcaacaccaactggcacacacagaacaataaaggaaagcaatggctgaaaaaatggcaaagaactacacctgcagccaaagatt 417  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  31925598 aaacaaaactgcagcaacaccaactggcacacacaagacaataaaggagagcaatggctgaaacaatggcaaagaactacaactgcagccaaagatt 31925694  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 4740112 - 4739990
Alignment:
Q  29 aattttaatacgatattactacaccaaagtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactcca 128  Q
    |||| |||||| ||||||||||||||  |||||||||||  |||| ||||||||||||||| | ||||  ||||||||| ||||||||||||| ||||||    
T  4740112 aattctaatactatattactacaccactgtcatttacatctgtatatacaatgtcacaatagaaaaaaa-cacattaagttgcacttgagatttactcca 4740014  T
Q  129 ccttgagttttgtagcaacaatgt 152  Q
    ||||||||| | ||||| ||||||    
T  4740013 ccttgagttctatagcagcaatgt 4739990  T

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Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 888486 - 888656
Alignment:
Q  1 ttcgttagtaattgtaaaaaatttctacaattttaatacgatattactacaccaaagtcatttacattggtatgtacaatgtcacaatacataaaattca 100  Q
    |||| |||||||||| |||  |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||  ||    
T  888486 ttcgctagtaattgtgaaatttttctacaattttaatacaatattactacaccaatgtcatttacattggtatgtacaatgtcacgatagataaaacaca 888585  T
Q  101 cattaagctgcacttgagattaactccaccttgagttttgtagcaacaatgtttatttcttcttcgtctgc 171  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||    
T  888586 cattaagctgcacttgagattagctccaccttaagttttgttgcaacaatgtttctttcttcttcgtctgc 888656  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 888740 - 888789
Alignment:
Q  255 gcttatatagaacacagtgattgtatctagaaagttactatcctactata 304  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  888740 gcttatatagaacacagtgattgtacctacaaagttattatcctactata 888789  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 10453813 - 10453692
Alignment:
Q  29 aattttaatacgatattactacaccaaagtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactcca 128  Q
    |||| |||||| ||||||||||||||  |||||||||||  |||| ||||||||||||||| | ||||  ||||||||| |||||||||||||| |||||    
T  10453813 aattctaatactatattactacaccagtgtcatttacatctgtatatacaatgtcacaatagaaaaaa--cacattaagttgcacttgagattagctcca 10453716  T
Q  129 ccttgagttttgtagcaacaatgt 152  Q
    ||||||||| | ||||| ||||||    
T  10453715 ccttgagttctatagcagcaatgt 10453692  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 52937291 - 52937210
Alignment:
Q  70 gtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttgtagcaacaatg 151  Q
    ||||| |||||||||||| | | ||||| ||||||||||| || ||||||||| ||||||| ||||||||||||||||||||    
T  52937291 gtatgcacaatgtcacaaaagaaaaaatacacattaagcttcatttgagattagctccaccctgagttttgtagcaacaatg 52937210  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 52944926 - 52944845
Alignment:
Q  70 gtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttgtagcaacaatg 151  Q
    ||||| |||||||||||| | | ||||| ||||||||||| || ||||||||| ||||||| ||||||||||||||||||||    
T  52944926 gtatgcacaatgtcacaaaagaaaaaatacacattaagcttcatttgagattagctccaccctgagttttgtagcaacaatg 52944845  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 12603305 - 12603414
Alignment:
Q  41 atattactacaccaaagtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttg 140  Q
    ||||||||||||||  |||||||||||  |||| |||||| |||||||| | ||||  ||||||||| |||||||||||||| |||||| ||||||| |     
T  12603305 atattactacaccagtgtcatttacatctgtatatacaatttcacaatagaaaaaa--cacattaagttgcacttgagattagctccactttgagttcta 12603402  T
Q  141 tagcaacaatgt 152  Q
    ||||| ||||||    
T  12603403 tagcagcaatgt 12603414  T

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Target: scaffold0238 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 13649 - 13528
Alignment:
Q  29 aattttaatacgatattactacaccaaagtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactcca 128  Q
    |||| |||||| ||||||||||||||  |||||||||||  |||| | |||| |||||||| | ||||  ||||||||| |||||||||||||| |||||    
T  13649 aattctaatactatattactacaccagtgtcatttacatctgtatattcaatttcacaatagaaaaaa--cacattaagttgcacttgagattagctcca 13552  T
Q  129 ccttgagttttgtagcaacaatgt 152  Q
    | ||||||| | ||||| ||||||    
T  13551 ctttgagttctatagcagcaatgt 13528  T

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