View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_low_26 (Length: 430)
Name: NF3726_low_26
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_26 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 72 - 430
Target Start/End: Complemental strand, 41248403 - 41248048
Alignment:
| Q |
72 |
tgggggacattagacctgacccaaaaaatcgtttgtagttaccaagaatgtgaaaacaaaatcgcatgcaattattattcgatatttctaagcgaaatca |
171 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| | || ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41248403 |
tgggggacattagacctgacctaagaaatcgtttgtaatggccgagagtgtgaaaacaaaatcgcatgcaattatta---gatatttctaagcgaaatca |
41248307 |
T |
|
| Q |
172 |
caatgaagaatcataatttgaaattctagttaaagattaagattcttatatagcctagaaacttatatatagttgtttaaggttcaatatattgaatgnn |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248306 |
caatgaagaatcataatttgaaattctagttaaagattaagattcttatatagcctagaaacttatatatagttgtttaaggttcaatatattgaatgaa |
41248207 |
T |
|
| Q |
272 |
nnnnntaaacattgagattaaaaaatataacagtatactactgccactgcaatattaattgaactcaatgtcataggagcagggtcgagtttaactaatt |
371 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248206 |
aaaaataaacattgagattgaaaaatataacagtatactactgccactgcaatattaattgaactcaatgtcataggagcagggtcgagtttaactaatt |
41248107 |
T |
|
| Q |
372 |
attttattaagaaatatgagcattacttaaaaagacgaataatatgtgaccgtgggagt |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41248106 |
attttattaagaaatatgagcattacttaaaaagaagaataatatgtgaccgtgggagt |
41248048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 9408880 - 9408832
Alignment:
| Q |
175 |
tgaagaatcataatttgaaattctagttaaagattaagattcttatata |
223 |
Q |
| |
|
||||||||||||| || |||||||||||| ||||||||||||| |||| |
|
|
| T |
9408880 |
tgaagaatcataaattagaattctagttaaggattaagattcttctata |
9408832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 8400265 - 8400190
Alignment:
| Q |
148 |
attcgatatttctaagcgaaatcacaatgaagaatcataatttgaaattctagttaaagattaagattcttatata |
223 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||| ||| |||||||||||| |||||| |||||| |||| |
|
|
| T |
8400265 |
attcgatgtttctaagcgaaattgtaatgaggaatcataaattggaattctagttaaggattaacattcttctata |
8400190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 20510690 - 20510741
Alignment:
| Q |
172 |
caatgaagaatcataatttgaaattctagttaaagattaagattcttatata |
223 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
20510690 |
caatgaagaatcataaatttgaattctagttaaagattaagattcttctata |
20510741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 14633395 - 14633327
Alignment:
| Q |
148 |
attcgatatttctaagcgaaatcacaatgaagaatcataatttgaaattctagttaaagattaagattc |
216 |
Q |
| |
|
|||| ||||||| ||| ||||| |||||||| ||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
14633395 |
attctatatttcaaagggaaattgcaatgaagtatcataaattggaattctagttaaatattaagattc |
14633327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 64735 - 64664
Alignment:
| Q |
152 |
gatatttctaagcgaaatcacaatgaagaatcataatttgaaattctagttaaagattaagattcttatata |
223 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||||||| |||||||||| |||| ||||| ||||||| |||| |
|
|
| T |
64735 |
gatattcctaagcgaaattgcaatgaggaatcataaactgaaattctatttaaggattacgattcttctata |
64664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University