View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_27 (Length: 427)
Name: NF3726_low_27
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Original strand, 52511929 - 52512346
Alignment:
| Q |
10 |
atgaatagagttagtagaagaggacatgttcgtggggtggtggtgctgcataagatgaagatgaaaagaaaggttgtcatgatcatgagtagtaaatcta |
109 |
Q |
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| T |
52511929 |
atgaatagagttagtagaagaggacatgttcgtggggtggtggtgttgcataggatgaagatgaaaagaaaggttgtcatgatcatgagtagtaaatcta |
52512028 |
T |
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| Q |
110 |
ctatgatgatggtcttgtaaattagcactaaatgatgttgatgaattagttaatagatgtaatgactgcatgttcatatccaaggatgtggtagaagacg |
209 |
Q |
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| T |
52512029 |
ctatgatgatggtcttgtaaattagcactaaatgatgttgatgaattagttaatagatctaatgactgcatgttcatatccaaggatgtggtagcagacg |
52512128 |
T |
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| Q |
210 |
aagacgagtaatgattcaagtttgatatatcgatgctcgggtgaatctggctactaatattattgttgcctctacttggagttggaatacttgtgtctcc |
309 |
Q |
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| T |
52512129 |
aagacgagtaatggttcaagtttgatatatcgatgctcgggtgaatctggctactaatattattgttgcctctacttggagttggaatacttgtgtctcc |
52512228 |
T |
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| Q |
310 |
aaagttaggataattttcagcgttataaaattctcctcctgtaaaaagtgtcttgagcatgagagcactcatatccttgtgctcgtcaatattattattc |
409 |
Q |
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| T |
52512229 |
aaagttaggataattttcagcgttataaaattctcctcctgtaaaaagtgtcttgagcatgagagcattcatatccttgtgctcgtcaatattattattc |
52512328 |
T |
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| Q |
410 |
ttcatctctgttgaattt |
427 |
Q |
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| T |
52512329 |
ttcatctctgttgaattt |
52512346 |
T |
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