View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_29 (Length: 424)
Name: NF3726_low_29
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Complemental strand, 30800147 - 30799751
Alignment:
| Q |
11 |
cacagataatcagtaatgataaactaaaaagtgtagagcatagagtggtgaccaatgcaagtcaaggtcgcacaactgctgctttttgcttagctccttc |
110 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30800147 |
cacagataattagtaatgataaactaaaaagtgtagagcatagagtggtgaccaatgcaagtcaaggtcgcacaactgctgctttttgcttagctccttc |
30800048 |
T |
|
| Q |
111 |
agatgattgcactgtagaaccagcacaatctttcattgatgaacacaatccaccaatgtgcaaacctttcaaatacaaggatttcagttcccactacttt |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30800047 |
agatgattgcactgtagagccagcacaatctttcattgatgaacacaatccaccaatgtgcaaacctttcaaatacaaggatttcagttcccactacttt |
30799948 |
T |
|
| Q |
211 |
aacaaatatggtgacaccgatgtagtgcttacatcatttggggcaacaaagaattaaggttttgctcccaagtgttaacataatttatgttatcatagat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30799947 |
aacaaatatggtgacaccgatgtagtgcttacatcatttggggcaacaaagaattaaggttttgcttccaagtgttaacataatttatgttatcatagat |
30799848 |
T |
|
| Q |
311 |
aacataaattaaatttccaatttggtatttt-atttataaacctctatgtattttaagtactatctttagtcttgacaaacatgttataggacaagt |
406 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30799847 |
aacataaattaaatttctaatttggtattttcatttataaacttctatgtattttaagtcctatctttagtcttgacaaacatgttataggacaagt |
30799751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 30808166 - 30807911
Alignment:
| Q |
12 |
acagataatcagtaatgataaactaaaaagtgtagagcatagagtggtgaccaatgcaagtcaaggtcgcacaactgctgctttttgcttagctccttca |
111 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||||||| | ||||| ||| ||||||| | ||| ||||||| ||| |||| ||||||||||| |
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| T |
30808166 |
acagataatcagtaatggtaagctaaaaagtgctgagcatagggctgtgacaaattcaagtcatgctcgtacaactggtgcattttttgtagctccttca |
30808067 |
T |
|
| Q |
112 |
gatgattgcactgtagaaccagcacaatctttcattgatgaacacaatccaccaatgtgcaaacctttcaaatacaaggatttcagttcccactacttta |
211 |
Q |
| |
|
|||||||| ||||| ||||||||| || ||| ||||||||| ||||||||||| | ||| | ||||||||||||||||||| |||||||||||||| |
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| T |
30808066 |
gatgattgttacgtagagccagcacaagctatcactgatgaacataatccaccaattttcaagtccttcaaatacaaggatttcaattcccactacttta |
30807967 |
T |
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| Q |
212 |
acaaatatggtgacaccgatgtagtgcttacatcatttggggcaacaaagaattaa |
267 |
Q |
| |
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||||||||| |||||| || || ||||| | |||||||| |||| ||||||||||| |
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| T |
30807966 |
acaaatatgctgacacagacgtggtgctgaaatcatttgaggcaccaaagaattaa |
30807911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 30793306 - 30793168
Alignment:
| Q |
12 |
acagataatcagtaatgataaactaaaaagtgtagagcatagagtggtgaccaatgcaagtcaaggtcgcacaactgctgctttttgcttagctccttca |
111 |
Q |
| |
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||||||||||| ||| | |||||||||||||||||| ||||| || ||||| ||| ||| | ||||||| |||| |||||| |||||| ||||||||||| |
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| T |
30793306 |
acagataatcaataacggtaaactaaaaagtgtagaacatag-gttgtgacaaattcaaatgaaggtcgaacaagtgctgcattttgcctagctccttca |
30793208 |
T |
|
| Q |
112 |
gatgattgcactgtagaaccagcacaatctttcattgatg |
151 |
Q |
| |
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| |||||| |||||| | ||||||||| || ||||||||| |
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| T |
30793207 |
gctgattgtactgtatagccagcacaagctatcattgatg |
30793168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 30758790 - 30758638
Alignment:
| Q |
12 |
acagataatcagtaatgataaactaaaaagtgtagagcatagagtggtgaccaatgcaagtcaaggtcgcacaactgctgctttttgcttagctccttca |
111 |
Q |
| |
|
||||||||| | ||||| ||| ||||||||||| || |||||||| ||||| ||| || |||| ||||||||||||||| |||| ||||||| ||| |
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| T |
30758790 |
acagataatgactaatggtaagctaaaaagtgtggaacatagagttgtgacaaattcagaacaagctcgcacaactgctgccttttttatagctccatca |
30758691 |
T |
|
| Q |
112 |
gatgattgcactgtagaaccagcacaatctttcattgatgaacacaatccacc |
164 |
Q |
| |
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| |||||| | |||||| || || | |||||||||||||||||||||| |
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| T |
30758690 |
ggtgattgtttcattgaaccaacaaaagatctcattgatgaacacaatccacc |
30758638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 37 - 227
Target Start/End: Original strand, 22014311 - 22014501
Alignment:
| Q |
37 |
aaaagtgtagagcatagagtggtgaccaatgcaagtcaaggtcgcacaactgctgctttttgcttagctccttcagatgattgcactgtagaaccagcac |
136 |
Q |
| |
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|||||||| |||||||| | ||||| ||| ||||||| | ||| ||||||||||| |||| |||||| ||| |||||||| | || || ||||||| |
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| T |
22014311 |
aaaagtgttgagcatagggctgtgacaaattcaagtcatgctcgtacaactgctgcattttttgtagctcattcggatgattgtaacgtcgagccagcac |
22014410 |
T |
|
| Q |
137 |
aatctttcattgatgaacacaatccaccaatgtgcaaacctttcaaatacaaggatttcagttcccactactttaacaaatatggtgacac |
227 |
Q |
| |
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|| || ||| ||||||||| ||||||||||| | ||| | ||||||||||||||||||| || ||||||||||||||||||| |||||| |
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| T |
22014411 |
aagctatcactgatgaacataatccaccaattttcaagtccttcaaatacaaggatttcaactctcactactttaacaaatatgctgacac |
22014501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 227
Target Start/End: Original strand, 15282617 - 15282807
Alignment:
| Q |
37 |
aaaagtgtagagcatagagtggtgaccaatgcaagtcaaggtcgcacaactgctgctttttgcttagctccttcagatgattgcactgtagaaccagcac |
136 |
Q |
| |
|
|||||||| |||||||| | ||||| ||| |||| || | ||| ||||||||||| |||| |||||| ||| |||||||| | || || ||||||| |
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| T |
15282617 |
aaaagtgttgagcatagggctgtgacaaattcaagccatgctcgtacaactgctgcattttttgtagctcattcggatgattgtaacgtcgagccagcac |
15282716 |
T |
|
| Q |
137 |
aatctttcattgatgaacacaatccaccaatgtgcaaacctttcaaatacaaggatttcagttcccactactttaacaaatatggtgacac |
227 |
Q |
| |
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|| || ||| ||||||||| ||||||||||| | ||| | ||||||||||||||||||| || ||||||||||||||||||| |||||| |
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| T |
15282717 |
aagctatcactgatgaacataatccaccaattttcaagtccttcaaatacaaggatttcaactctcactactttaacaaatatgctgacac |
15282807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 227
Target Start/End: Original strand, 18158229 - 18158419
Alignment:
| Q |
37 |
aaaagtgtagagcatagagtggtgaccaatgcaagtcaaggtcgcacaactgctgctttttgcttagctccttcagatgattgcactgtagaaccagcac |
136 |
Q |
| |
|
|||||||| |||||||| | ||||| ||| |||| || | ||| ||||||||||| |||| |||||| ||| |||||||| | || || ||||||| |
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| T |
18158229 |
aaaagtgttgagcatagggctgtgacaaattcaagccatgctcgtacaactgctgcattttttgtagctcattcggatgattgtaacgtcgagccagcac |
18158328 |
T |
|
| Q |
137 |
aatctttcattgatgaacacaatccaccaatgtgcaaacctttcaaatacaaggatttcagttcccactactttaacaaatatggtgacac |
227 |
Q |
| |
|
|| || ||| ||||||||| ||||||||||| | ||| | ||||||||||||||||||| || ||||||||||||||||||| |||||| |
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|
| T |
18158329 |
aagctatcactgatgaacataatccaccaattttcaagtccttcaaatacaaggatttcaactctcactactttaacaaatatgctgacac |
18158419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 227
Target Start/End: Original strand, 24224115 - 24224305
Alignment:
| Q |
37 |
aaaagtgtagagcatagagtggtgaccaatgcaagtcaaggtcgcacaactgctgctttttgcttagctccttcagatgattgcactgtagaaccagcac |
136 |
Q |
| |
|
|||||||| |||||||| | ||||| ||| |||| || | ||| ||||||||||| |||| |||||| ||| |||||||| | || || ||||||| |
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| T |
24224115 |
aaaagtgttgagcatagggctgtgacaaattcaagccatgctcgtacaactgctgcattttttgtagctcattcggatgattgtaacgtcgagccagcac |
24224214 |
T |
|
| Q |
137 |
aatctttcattgatgaacacaatccaccaatgtgcaaacctttcaaatacaaggatttcagttcccactactttaacaaatatggtgacac |
227 |
Q |
| |
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|| || ||| ||||||||| ||||||||||| | ||| | ||||||||||||||||||| || ||||||||||||||||||| |||||| |
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|
| T |
24224215 |
aagctatcactgatgaacataatccaccaattttcaagtccttcaaatacaaggatttcaactctcactactttaacaaatatgctgacac |
24224305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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