View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_low_3 (Length: 718)
Name: NF3726_low_3
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 645; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 17 - 704
Target Start/End: Complemental strand, 27356306 - 27355618
Alignment:
| Q |
17 |
catgttttcttcctagctttttactttttatgaatcaattaaatgtgtaatcatggacttgcttctggcttggcaaagtgtgtgtaattctatagaaaca |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356306 |
catgttttcttcctagctttttactttttatgaatcaattaaatgtgtaatcatggacttgcttctggcttggcaaagtgtgtgtaattctatagaaaca |
27356207 |
T |
|
| Q |
117 |
agtgtgttattaatttgacatcacatttggacaagatttgtgattgctttcattgttttggcgccaaagatgcatgttcctaacatgattatttttcttc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27356206 |
agtgtgttattaatttgacatcacatttggacaagatttgtgattgctttcattgttttggcgccaaagttgcatgttcctaacatgattatttttcttc |
27356107 |
T |
|
| Q |
217 |
aacatttcattttcataataaatagtcattctttttgcactacagttagaatgtgtcggttttgcctattacttactcataaattctctactccatgttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| |
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| T |
27356106 |
aacatttcattttcataataaatagtcattctttttgcactacagttagaatgtgtcgtttttgcctattactgactcataaattctttactccatgttt |
27356007 |
T |
|
| Q |
317 |
agtgccttatttcaaggaaggaactaaacgctaataggcaatttacacatgataaataatcatcaatttacaagattaataggcaa-ttatgttgggata |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
27356006 |
agtgccttatttcaaggaaggaactaaacgctaataggcaatttacacatgataaataatcatcaatttacaagattaataggcaatttatgttgggata |
27355907 |
T |
|
| Q |
416 |
agttgcttaattttgtggaaaaaggattcttgaaattttattcaacttatatgatacattttctaagtgcaatacataacttatatacacaaatcaaaac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27355906 |
agttgcttaattttgtggaaaaaggattctggaaattttattcaacttatatgatacattttctaagtgcaatacataacttatatacacaaatcaaaac |
27355807 |
T |
|
| Q |
516 |
ttctacctaaccatgattacttgaccaccaagtaaaccatatcgtgagttaatctttaagtaactaactcatccttatccaactaacttctagctagtaa |
615 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27355806 |
ttctaactaaccatggtttcttgaccaccaagtaaaccatatggtgagttaatctttaagtaactaactcatccttatccaactaacttctagctagtaa |
27355707 |
T |
|
| Q |
616 |
caaactaataataacaagcttatgctaatctaaagtatatgcatcattacaactatacactagattactacactaatgcattctctgtg |
704 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27355706 |
caaactaataataacaagcttatgctaatctaaagtatatgcatcattacaactatacactagattactacactaatgcattctctgtg |
27355618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 17 - 704
Target Start/End: Original strand, 45410857 - 45411542
Alignment:
| Q |
17 |
catgttttcttcctagctttttactttttatgaatcaat----taaatgtgtaatcatggacttgcttctggcttggcaaagtgtgtgtaattctataga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410857 |
catgttttcttcctagctttttactttttatgaatcaatcaattaaatgtgtaatcatggacttgcttctggcttggcaaagtgtgtgtaattctataga |
45410956 |
T |
|
| Q |
113 |
aacaagtgtgttattaatttgacatcacatttggacaagatttgtgattgctttcattgttttggcgccaaagatgcatgttcctaacatgattattttt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
45410957 |
aacaagtgtgttattaatttgacatcacatttggacaagatttgtgattgctttcattgttttggcgccaaagttgcatgttcctaacatgattattttt |
45411056 |
T |
|
| Q |
213 |
cttcaacatttcattttcataataaatagtcattctttttgcactacagttagaatgtgtcggttttgcctattactt------actcataaattctcta |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
45411057 |
cttcaacatttcattttcataataaatagtcattctttttgcaatacagttagaatgtgtcgtctttgcctattactttacttaactcataaattctcta |
45411156 |
T |
|
| Q |
307 |
ctccatgtttagtgccttatttcaaggaaggaactaaacgctaataggcaatttacacatgataaataatcatcaatttacaagattaataggcaatt-a |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45411157 |
ctccatgtttagtgccttatttcaaggaaggaactaaacgcgaata-------------tgataaataatcatcaatttacaagattaataggcaattta |
45411243 |
T |
|
| Q |
406 |
tgttgggataagttgcttaattttgtggaaaaaggattcttgaaattttattcaacttatatgatacattttctaagtgcaatacataacttatatacac |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
45411244 |
tgttgggataagttgcttaattttgtggaaaaaggattgtggaaattttattcaacttatatgatacattttctcagtgcaatacataatttatatacac |
45411343 |
T |
|
| Q |
506 |
aaatcaaaacttctacctaaccatgattacttgaccaccaagtaaaccatatcgtgagttaatctttaagtaactaactcatccttatccaactaacttc |
605 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
45411344 |
aaatcaaaacttctaactaaccatgattacttgaccaccaagtaaaccatatcgtgagttaatctttaagtaactatctcatccttatccaactaacttc |
45411443 |
T |
|
| Q |
606 |
tagctagtaacaaactaataataacaagcttatgctaatctaaagtatatgcatcattacaactatacactagattactacactaatgcattctctgtg |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45411444 |
tagctagtaacaaactaataataacaagcttatgctaatctaaagtatatgcatcattacaactatacactagattactacattaatgcattctctgtg |
45411542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 485 - 629
Target Start/End: Complemental strand, 7552267 - 7552123
Alignment:
| Q |
485 |
caatacataacttatatacacaaatcaaaacttctacctaaccatgattacttgaccaccaagtaaaccatatcgtgagttaatctttaagtaactaact |
584 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||| ||| |||||||||| ||||| ||||||||| |
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|
| T |
7552267 |
caatacatcacttatatacacaaatcaaaacttctaactaactatggttacttgactcgcaagtaaattctatggtgagttaatttttaactaactaact |
7552168 |
T |
|
| Q |
585 |
catccttatccaactaacttctagctagtaacaaactaataataa |
629 |
Q |
| |
|
||||||||||| || |||||||||| | |||||| ||||||||| |
|
|
| T |
7552167 |
catccttatccgaccaacttctagccaataacaatttaataataa |
7552123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 562 - 621
Target Start/End: Original strand, 8849968 - 8850027
Alignment:
| Q |
562 |
agttaatctttaagtaactaactcatccttatccaactaacttctagctagtaacaaact |
621 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||||||| ||||||||||| |||| |
|
|
| T |
8849968 |
agttaatcttaaactaactaactcaatcttatccaactaacttttagctagtaactaact |
8850027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 495 - 682
Target Start/End: Original strand, 14806232 - 14806416
Alignment:
| Q |
495 |
cttatatacacaaatcaaaacttctacctaaccatgattacttgaccaccaagtaaaccatatcgtgagttaatctttaagtaactaactcatccttatc |
594 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| ||| || ||| ||||||| | || ||| |||||||||||| ||| ||||||| || |||||||| |
|
|
| T |
14806232 |
cttatatacacaaattaaaacttctgactaactatggttgtttgtccaccaaattaaatctatagtgagttaatctctaactaactaattcgtccttatc |
14806331 |
T |
|
| Q |
595 |
caactaacttctagctagtaacaaactaataataacaagcttatgctaatctaaagtatatgcatcattacaactatacactagatta |
682 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||| ||| | ||||||||||||| | |||||| ||||||||||| ||||||| |
|
|
| T |
14806332 |
caactaacttctagcctgtaacaaac---ttttaacaaacttgttttaatctaaagtatgtacatcataacaactatacattagatta |
14806416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 545 - 624
Target Start/End: Original strand, 10280970 - 10281049
Alignment:
| Q |
545 |
aagtaaaccatatcgtgagttaatctttaagtaactaactcatccttatccaactaacttctagctagtaacaaactaat |
624 |
Q |
| |
|
||||||||| || |||||||||||| ||| ||||||||||||||| || ||||||||||||| |||| |||||||||| |
|
|
| T |
10280970 |
aagtaaaccctaaggtgagttaatctctaaccaactaactcatccttctctaactaacttctagatagtcacaaactaat |
10281049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 619
Target Start/End: Complemental strand, 55212377 - 55212258
Alignment:
| Q |
497 |
tatatacacaaatc-aaaacttctacctaaccatgattacttgaccaccaagtaaaccatatcgtgagttaatctttaagtaactaactcatccttatcc |
595 |
Q |
| |
|
|||||||||||||| ||||||| || ||| |||| ||||||||| |||||||||||||||| | | |||||| ||| |||||||||||||||| |
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|
| T |
55212377 |
tatatacacaaatcgaaaacttataattaatcatggttacttgactaccaagtaaaccatatgatttgctaatctctaa----ctaactcatccttatca |
55212282 |
T |
|
| Q |
596 |
aactaacttctagctagtaacaaa |
619 |
Q |
| |
|
||| |||||||| ||||||||||| |
|
|
| T |
55212281 |
aaccaacttctatctagtaacaaa |
55212258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 680
Target Start/End: Original strand, 31608527 - 31608605
Alignment:
| Q |
599 |
taacttctagctagtaacaaactaataataacaagcttatgctaatctaaagtatatgcatcattacaactatacactagat |
680 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| || ||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
31608527 |
taacttctagctaggaacaaactaataa---caaatttgtgctaatctaatatatatacatcaaaacaactatacactagat |
31608605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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