View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_30 (Length: 423)
Name: NF3726_low_30
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 98 - 405
Target Start/End: Original strand, 45483415 - 45483718
Alignment:
| Q |
98 |
gagtttgaatccgtaaccctacttctcaacattacatatgttaattttgtcgttagatttctaaaataaaaatttaacttctaattaaattgtactattg |
197 |
Q |
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| T |
45483415 |
gagtttgaatccgtaaccctacttctcaacattacatatgttaattttgtcgttagatttctaaaataaaaatttaacttctaattaaattgtatta--- |
45483511 |
T |
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| Q |
198 |
agtaataattaagaaaccttgataaagttaaaaatggatttgttaacatatagtactatatggataacaaattattaatggaaactttgatctaagaggc |
297 |
Q |
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| T |
45483512 |
aataataataaagaa-ccttgataaagttaaaaatggatttgttaacatatagtactatatggataacaaattattaatggaaactttgatctaagaggc |
45483610 |
T |
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| Q |
298 |
aaaagtttggtgtgttggtcgtgattgtgattccattaaagcactatttcgtgttgatgacggaacttccatcatgatgtatgtatccatccatttccac |
397 |
Q |
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| T |
45483611 |
aaaagtttggtgtgttggtcgtgattgtgattccattaaagcactatttcgtgttgatgacggaacttccatcatgatgtatgtatccatccatttccac |
45483710 |
T |
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| Q |
398 |
gatcttgt |
405 |
Q |
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| T |
45483711 |
gatcttgt |
45483718 |
T |
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