View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_32 (Length: 420)
Name: NF3726_low_32
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_32 |
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| [»] scaffold0649 (1 HSPs) |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 22 - 409
Target Start/End: Complemental strand, 53415281 - 53414894
Alignment:
| Q |
22 |
ctgcaacatctccatcttagttagtaaatatagggacataatatatgtagctcatactttagcaggagcatcaagattacatgctggtcaccaagagatt |
121 |
Q |
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| T |
53415281 |
ctgcaacatctccatcttagttagtaaatatagggacataatacatgtagctcatactttagcaggagcatcaagattacatgctcgtcaccaagagatt |
53415182 |
T |
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| Q |
122 |
gagactcttttgagaagtgaaataatatgagtttttgattgtnnnnnnnnnnnnnnnnntccatgcttgaatatgaattttatacttgttcatgaaatac |
221 |
Q |
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| T |
53415181 |
gagactcttttgagaagtgaaataatacgagtttttgattgtaaaaaataaaaataaaatccatgcttgaatatgaattttatacttgttcatgaaatac |
53415082 |
T |
|
| Q |
222 |
atttttagtctcatcattgcttaccgtgaaatctctcataccatcgaagtgtgtgagcaactcttggaccacgctcatctccaatcccttctttgtcaaa |
321 |
Q |
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| T |
53415081 |
atttttagtctcatcattgcttaccgtgaaatctctcataccatcgaagtgcgtgagcaactcttggaccacactcatctccaatcccttctttgtcaaa |
53414982 |
T |
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| Q |
322 |
atgcatctcaataaatcttcacgaaacccacacaccacactattctcaccatactttttaggatataccctactctatcacccttgcc |
409 |
Q |
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| T |
53414981 |
atgcatctcaataaatcttcacgaaacccacacaccacactattctcaccatactttttaggatataccctactctatcacccttgcc |
53414894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 1930224 - 1930268
Alignment:
| Q |
119 |
attgagactcttttgagaagtgaaataatatgagtttttgattgt |
163 |
Q |
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| T |
1930224 |
attgagactcttttgagaaaggaaataatatgagattttgattgt |
1930268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 1930156 - 1930199
Alignment:
| Q |
72 |
ctcatactttagcaggagcatcaagattacatgctggtcaccaa |
115 |
Q |
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| T |
1930156 |
ctcatactttagcaggggcgtcaagattacatgctcgtcaccaa |
1930199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 26924536 - 26924578
Alignment:
| Q |
119 |
attgagactcttttgagaagtgaaataatatgagtttttgatt |
161 |
Q |
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| T |
26924536 |
attgagactcttttaagaagtgaaataagatgagattttgatt |
26924578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 1100975 - 1100931
Alignment:
| Q |
119 |
attgagactcttttgagaagtgaaataatatgagtttttgattgt |
163 |
Q |
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| T |
1100975 |
attgagactcttttgagaagtgaaataatatgagattttgattgt |
1100931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 362
Target Start/End: Original strand, 4651 - 4742
Alignment:
| Q |
271 |
tgtgtgagcaactcttggaccacgctcatctccaatcccttctttgtcaaaatgcatctcaataaatcttcacgaaacccacacaccacact |
362 |
Q |
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| T |
4651 |
tgtgtgagcaaatcatggaactcactcatctccgatcccatcttcgtccaaatgcacctcaagaaatcatcacaaaacccacacatcacact |
4742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 29370409 - 29370453
Alignment:
| Q |
119 |
attgagactcttttgagaagtgaaataatatgagtttttgattgt |
163 |
Q |
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||||| ||||||||||||||||||||||||| ||||||| ||||| |
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| T |
29370409 |
attgaaactcttttgagaagtgaaataatataagttttttattgt |
29370453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 20713369 - 20713283
Alignment:
| Q |
268 |
aagtgtgtgagcaactcttggaccacgctcatctccaatcccttctttgtcaaaatgcatctcaataaatcttcacgaaacccacac |
354 |
Q |
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| T |
20713369 |
aagtgtgtgagcaagtcatggtactctctcatctccaatcccttcttcatcaaaaaacacctctttaaatcttcacaaaacccacac |
20713283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 20974774 - 20974858
Alignment:
| Q |
268 |
aagtgtgtgagcaactcttggaccacgctcatctccaatcccttctttgtcaaaatgcatctcaataaatcttcacgaaacccac |
352 |
Q |
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| T |
20974774 |
aagtgtgtgagcaaatcatggaactcgcttatctctgatccctttttcgtcaaattgcacctcatcaaatcttcaagaaacccac |
20974858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 17208 - 17122
Alignment:
| Q |
268 |
aagtgtgtgagcaactcttggaccacgctcatctccaatcccttctttgtcaaaatgcatctcaataaatcttcacgaaacccacac |
354 |
Q |
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| T |
17208 |
aagtgtgtgagcaagtcatggtactctctcatctccaatcccttcttcatcaaaaaacacctctttaaatcttcacaaaacccacac |
17122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 10554476 - 10554419
Alignment:
| Q |
297 |
catctccaatcccttctttgtcaaaatgcatctcaataaatcttcacgaaacccacac |
354 |
Q |
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| T |
10554476 |
catctccaatcctgactttgttcaaatgcatctcaataaatcatcacgaaatccacac |
10554419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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