View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_34 (Length: 415)
Name: NF3726_low_34
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 13673731 - 13674116
Alignment:
| Q |
12 |
atgaacatgatctactattgtcaggccaagccacttcttgactcaaaaaatgtccaagagctagcagatcctagattagaagagaaatatgatcccaccg |
111 |
Q |
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| T |
13673731 |
atgaacatgatctactattgtcaggccaagccacttcttgactcaaaaaatgtccaagagctagcagatcctagattagaagagaaatatgatcccaccg |
13673830 |
T |
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| Q |
112 |
aaatgaaccgtgccatgaagacagcttccttgtgcgtccaccattcatcctccaagcggccattcatgaaacaagtaagaaaataagcatccttttctat |
211 |
Q |
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| T |
13673831 |
aaatgaaccgtgccatgaagacagcttccttgtgcgtccaccattcatcctccaagcggccattcatgaaacaagtaagaaaataagcatccttttctat |
13673930 |
T |
|
| Q |
212 |
gaagcgctgacacatacattggacacaatacttacactaataataatttacgtaagcaaaggtgattaaatgtaaacacatgtgtttgtgtctggaacgt |
311 |
Q |
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| T |
13673931 |
gaagcgctgacacatacattggacacaatacttacactaataataatttaagtaagcaaaggtgattacatgtaaacacatgtgtttgtgtctggaacgt |
13674030 |
T |
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| Q |
312 |
gatttgtttctttctgtactaaaggttgcgcaactactgaagggcgaggaagcaattatagattccaaacatcattcaggtgcttc |
397 |
Q |
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| T |
13674031 |
gatttgtttctttctgtactaaaggttgcgcaactactgaagggcgaggaagcaattatagattccaaacatcattcaggtgcttc |
13674116 |
T |
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