View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_35 (Length: 414)
Name: NF3726_low_35
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 125 - 398
Target Start/End: Complemental strand, 34753399 - 34753126
Alignment:
| Q |
125 |
cataagaacagcatacttgaacgaggaagaaattcatgatacgattaatatgacaaaaaggtttttaatcaaaatcactaaaaactgacaaaaatcgaag |
224 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34753399 |
cataagaacagcatgcttgaacgaggaagaaattcattatacaattaatatgacaaaaaggtttctaatcaaaatcactaaaaactgacaaaaatcgaag |
34753300 |
T |
|
| Q |
225 |
ccaaacgtatcataacagtgaaatgcacgttaattgagaaaccacttacgcgtaaagcgtccacagtcatctgaccaaacagaccattgaatcttggatc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34753299 |
ccaaacgtatcataacagtgaaatgcacgttaattgagaaaccacttacgcgcaaagcgtccacagtcatctgaccaaacagaccattgaatcttggatc |
34753200 |
T |
|
| Q |
325 |
ttgtctaattcttatccagtcccgccggtgaggaaaagttgcacgagcaagaagaagttgatgttcctcctctt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34753199 |
ttgtctaattcttatccagtcccgccggtgaggaaaagttgcacgagcaagaagaagttgatgttcctcctctt |
34753126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 79 - 227
Target Start/End: Complemental strand, 34753701 - 34753553
Alignment:
| Q |
79 |
tcctggatgtaaactctcctactaaccgctacaaacaacccgaaaacataagaacagcatacttgaacgaggaagaaattcatgatacgattaatatgac |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34753701 |
tcctggatgtaaactctcctactaaccgctacaaacaacccgaaaacataagaacagcatgcttgaacgaggaagaaattcatgatacgattaatatgac |
34753602 |
T |
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| Q |
179 |
aaaaaggtttttaatcaaaatcactaaaaactgacaaaaatcgaagcca |
227 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34753601 |
aaaaaggtttctaatcaaaatcactaaaaactgacaaaaatcgaagcca |
34753553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 34753527 - 34753423
Alignment:
| Q |
125 |
cataagaacagcatacttgaacgaggaagaaattcatgatacgattaatatgacaaaaaggtttttaatcaaaatcactaaaaactgacaaaaatcgaag |
224 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
34753527 |
cataagaacagcatgcttgaacgaggaagaaattcatgatacaattaatatggcaaaaaggtttctgatcaaaatcactaaaaactgacaaaaatcgaag |
34753428 |
T |
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| Q |
225 |
ccaaa |
229 |
Q |
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||||| |
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| T |
34753427 |
ccaaa |
34753423 |
T |
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