View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_low_36 (Length: 414)
Name: NF3726_low_36
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 3017781 - 3018170
Alignment:
| Q |
19 |
gtgatcactatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatacctattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3017781 |
gtgatcactatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatacctattt |
3017880 |
T |
|
| Q |
119 |
gcggcatgctgtgaatatgttgggtactatggttgatgttcttgactcaataatcatgcagtgaactttggtgcaaatgatgcatcaatcatgtgggaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3017881 |
gcggcatgctgtgaatatgttgggtactatggttgatgttcttgactcaataatcatgcagtgaactttggtgcaaatgatgcatcaatcatgtgggaaa |
3017980 |
T |
|
| Q |
219 |
cttcggtgcttttggttaagaattttttgtgccaaattagttgtttatctttaaaaatattttctagttaagaccaaacttcatatatgta----tgttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3017981 |
tttcggtgcttttggttaagaattttttgtgccaaattagttgtttatctttaaaaatattttctagttaagaccaaacttcatatatgtatgtttgttt |
3018080 |
T |
|
| Q |
315 |
atagatattgccaaatttctttgcttgattattctaaaaggtaagtttcatatgcaattcatctagataatattctaattacatcctatg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3018081 |
atagatattgccaaatttctttgcttgattattctaaaaggtaagtttcatatgcaattcatctagataatattctaattacatcctatg |
3018170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 3020882 - 3021251
Alignment:
| Q |
19 |
gtgatcactatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatacctattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
3020882 |
gtgatcactatcattatgattcaggttgtttcaccaaatgctcgaaagttgggggaaagtgttcttcaaaagtgtgcaacaaggcttataatacctgttt |
3020981 |
T |
|
| Q |
119 |
gcggcatgctgtgaatatgttgggtactatggttg---------atgttcttgactcaataatcatgcagtgaactttggtgcaa-atgat---gcatca |
205 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||| |||| | |||||| | ||||||||||||| ||| | | || |
|
|
| T |
3020982 |
gcggtatgttgtgaatatgttgggtactatggttgattataatcatgttcttgcctcagtgatcatgtggcaaactttggtgcaatatgttctaatagca |
3021081 |
T |
|
| Q |
206 |
atcatgtgggaaacttcggtgcttttggttaagaattttttgtgccaaattagttg-tttatctttaaaaatattttct-------agttaagaccaaac |
297 |
Q |
| |
|
||||||||| |||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
3021082 |
atcatgtggtgaacttcagtgc---tggctaagaattttttgtgccaaattagttgttttatctttaaaaatatttactacttaagagttaagaccaaac |
3021178 |
T |
|
| Q |
298 |
ttcatatatgtatgtttat--agatattgccaaatttctttgcttgattattctaaaaggtaagtttcatatgc |
369 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
3021179 |
ttcatat-tgtatgtttatacagatattgccaaaagtcttttcttgactattctaaaaggtaagttgcatatgc |
3021251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 3033753 - 3033830
Alignment:
| Q |
29 |
tcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagctta |
106 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||||||||||| |||| || ||| ||| |||||||||| ||||| |
|
|
| T |
3033753 |
tcatcatgattcaggaggttttgccaattgctcgaaagttgggggaaagagtccttgaaagttgtgcaacaaggctta |
3033830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University