View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_39 (Length: 388)
Name: NF3726_low_39
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_39 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 21 - 388
Target Start/End: Complemental strand, 35040726 - 35040359
Alignment:
| Q |
21 |
agtccgctttgttcaaccatatcaactggtcctccatctttagtcacaatgtcaaatccatgcaataaagtagcaagtgttatttgcatcagctgaagac |
120 |
Q |
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| T |
35040726 |
agtccgctttgttcaaccatatcaactggtcctccatctttagtcacaatgtcaaacccatgcaataaagtagcaagtgttatttgcatcagctgaagac |
35040627 |
T |
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| Q |
121 |
taaatgagattccaggacatattcttctacccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtgaggaatct |
220 |
Q |
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| T |
35040626 |
taaatgagattccaggacatattcttctacccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtaaggaatct |
35040527 |
T |
|
| Q |
221 |
ctctggtcgaaactccaacggatccgaatataacattggatcttgttgaagtttcgaaaggttagttatgagtctcgtaacggctggcacgtggtatcca |
320 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |
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| T |
35040526 |
ctctggtcgaaactcatgcggatccgaatataacattggatctcgttgaagtttcgaaaggttagttatgagacgcgtaccggctggcacgtggtatcca |
35040427 |
T |
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| Q |
321 |
ccaacgatacaatcttcaatggactcatgaggcacatcgagtggtgcggctgggtacagacgcaatgt |
388 |
Q |
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| T |
35040426 |
ccaacggtacaatcttcaatggactcatgaggcacatcgagtggtgcggctgggtacagacgcaatgt |
35040359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 32 - 388
Target Start/End: Complemental strand, 35026752 - 35026396
Alignment:
| Q |
32 |
ttcaaccatatcaactggtcctccatctttagtcacaatgtcaaatccatgcaataaagtagcaagtgttatttgcatcagctgaagactaaatgagatt |
131 |
Q |
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| T |
35026752 |
ttcaaccatatcaaccggtcctccatctgaagtcactatgtcaaacccatgcaacaatgtagcaagtgttatttgcataagttgaagaccaaatgagatt |
35026653 |
T |
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| Q |
132 |
ccaggacatattcttctacccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtgaggaatctctctggtcgaa |
231 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| |||| |||||||||||||| |||||||||| |
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| T |
35026652 |
ccaggacacattcttctacctgcaccaaatggaatcaactcgaaatgttggcctttgacatcaacatccttgtgtgttgtgaggaatctttctggtcgaa |
35026553 |
T |
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| Q |
232 |
actccaacggatccgaatataacattggatcttgttgaagtttcgaaaggttagttatgagtctcgtaacggctggcacgtggtatccaccaacgataca |
331 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||| | |||| | |||||||||||||||||||||| | |||| |
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| T |
35026552 |
actccaacggatccgaatataacattggatctcgttgaagcttcgaaaggttggttaggagacgcgtaccagctggcacgtggtatccaccaatggtaca |
35026453 |
T |
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| Q |
332 |
atcttcaatggactcatgaggcacatcgagtggtgcggctgggtacagacgcaatgt |
388 |
Q |
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|| ||||| ||||| ||||||| || |||||||| | |||||| ||||||||||| |
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| T |
35026452 |
attctcaatagactcgtgaggcaaattcagtggtgctggtgggtatagacgcaatgt |
35026396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 30 - 388
Target Start/End: Complemental strand, 35032700 - 35032342
Alignment:
| Q |
30 |
tgttcaaccatatcaactggtcctccatctttagtcacaatgtcaaatccatgcaataaagtagcaagtgttatttgcatcagctgaagactaaatgaga |
129 |
Q |
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||||||||||||| ||||||||||||||||| |||||| |||| ||| |||||||| || | ||||||||| |||||||||| ||||||||||||||||| |
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| T |
35032700 |
tgttcaaccatattaactggtcctccatcttgagtcactatgttaaacccatgcaacaatgcagcaagtgtgatttgcatcaactgaagactaaatgaga |
35032601 |
T |
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| Q |
130 |
ttccaggacatattcttctacccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtgaggaatctctctggtcg |
229 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| | |||||||||||| | |
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| T |
35032600 |
ttccaggacatattcttctacccacgccaaatggaatcaactcaaaatgttggcccttgacatcaacatccttgtgtgttgtgtgaaatctctctggttg |
35032501 |
T |
|
| Q |
230 |
aaactccaacggatccgaatataacattggatcttgttgaagtttcgaaaggttagttatgagtctcgtaacggctggcacgtggtatccaccaacgata |
329 |
Q |
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||||||||||||||| |||||||| ||||||||| |||||||||| |||||||| |||| ||| | ||| | |||||||||||||||||||||| | || |
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| T |
35032500 |
aaactccaacggatctgaatataatattggatctcgttgaagttttgaaaggttggttaggagacacgtgccagctggcacgtggtatccaccaatggta |
35032401 |
T |
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| Q |
330 |
caatcttcaatggactcatgaggcacatcgagtggtgcggctgggtacagacgcaatgt |
388 |
Q |
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| T |
35032400 |
caatcctcaatagactcatgaggcaaattgagtggtccaggtgggtacaaacgcaatgt |
35032342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 35048350 - 35048012
Alignment:
| Q |
19 |
tcagtccgctttgttcaaccatatcaactggtcctccatctttagtcacaatgtcaaatccatgcaataaagtagcaagtgttatttgcatcagctgaag |
118 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||| |||||| || |||||||||||||| ||||| |||||||||||||| || |||| ||| |
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| T |
35048350 |
tcagtccactttgttcaaccataccaactggtcctccatcttgagtcactatatcaaatccatgcaacaaagttgcaagtgttatttgaattagcttaag |
35048251 |
T |
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| Q |
119 |
actaaatgagattccaggacatattcttctacccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtgaggaat |
218 |
Q |
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|| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||| |||| |||||||||||| |
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| T |
35048250 |
accaaatgatattccgggacacattcttctacccgcaccaaatggaatcaactcaaaatgttggcctttgagatcaatatccttgtgtgttgtgaggaat |
35048151 |
T |
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| Q |
219 |
ctctctggtcgaaactccaacggatccgaatataacattggatcttgttgaagtttcgaaaggttagttatgagtctcgtaacggctggcacgtggtatc |
318 |
Q |
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||||||||||||||||| | |||| ||||||| | |||||||| |||||||| |||| ||| || | ||| | ||| | || ||||| || |||| |
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| T |
35048150 |
ctctctggtcgaaactctagtggattagaatatataaacggatcttgctgaagttttgaaatgtttgtaaggagacgagtaccagcgggcacatgatatc |
35048051 |
T |
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| Q |
319 |
caccaacgatacaatcttcaatggactcatgaggcacat |
357 |
Q |
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| T |
35048050 |
caccaatggtacaatcttcagtggactcatgaggcacat |
35048012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 2261243 - 2261333
Alignment:
| Q |
114 |
tgaagactaaatgagattccaggacatattcttctacccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgt |
204 |
Q |
| |
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||||||| ||| || ||||| |||||||| |||||||| |||||||| | ||||||||||||||| |||||| |||| |||| ||||| |
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| T |
2261243 |
tgaagaccaaaagatattcctggacatatccttctaccacttccaaatggtaacaactcaaaatgttgacccttggcatcaacatttttgt |
2261333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 22906280 - 22906328
Alignment:
| Q |
129 |
attccaggacatattcttctacccgcaccaaatggaatcaactcaaaat |
177 |
Q |
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|||||||||||||| ||||| || ||||||||||| || |||||||||| |
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| T |
22906280 |
attccaggacatatccttctcccagcaccaaatggtataaactcaaaat |
22906328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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