View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_low_4 (Length: 675)
Name: NF3726_low_4
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 1 - 675
Target Start/End: Original strand, 42125921 - 42126595
Alignment:
| Q |
1 |
gataaatcccaagaaaatggtatatagcatcagactcggttttggtcatggtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42125921 |
gataaatcccaagaaaatggtatatagcatcagactcggttttggtcatagtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatc |
42126020 |
T |
|
| Q |
101 |
aatttctgttataaatttaatatatcgtgactcgtggagaattattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtg |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126021 |
aatttctgttataaatttaatagatcgtgactcgtggacaattattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtg |
42126120 |
T |
|
| Q |
201 |
tatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaacacagtgtcacatgcgatgtttgtaacttcatgttcaaata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42126121 |
tatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaacacagtgtcacatgcgatgtttgtaatttcatgttcaaata |
42126220 |
T |
|
| Q |
301 |
acacaactgctatcatatggaatgatgttttgagcaataaagcatggattcttgcatctaattaccggaaaacaaatttaaaagttttgcatggtattgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126221 |
acacaactgctatcatatggaatgatgttttgagcaataaagcatggattcttgcatctaattaccggaaaacaaatttaaaagttttgcatggtattgg |
42126320 |
T |
|
| Q |
401 |
aatataaaatgttttgctgcttggaactaacctctttaacattattaagctttgcagttttaagaacatgttggcctccttcaactttttgtagtggttg |
500 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126321 |
aatataaaatgttttggtgcttggaactaacctctttaacattattaagctttgcagttttaagaacatgttggcctccttcaactttttgtagtggttg |
42126420 |
T |
|
| Q |
501 |
tatctcagctccttctttgataatacttcctttttgaataacatcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaatt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126421 |
tatctcagctccttctttgataatacttcctttttgaataacagcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaatt |
42126520 |
T |
|
| Q |
601 |
ccattttttacctcatggctttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaactagagac |
675 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126521 |
ccattttttacctcatggctttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaactagagac |
42126595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 520 - 665
Target Start/End: Original strand, 24929735 - 24929880
Alignment:
| Q |
520 |
ataatacttcctttttgaataacatcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaattccattttttacctcatggc |
619 |
Q |
| |
|
|||| |||||| ||||||| |||| ||||||||||||| |||||| | |||||| | || ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
24929735 |
ataacacttccgttttgaacaacagcataaggtccaatagaagaacattttccaatcttaatgggatggagacttagaattccattctttacctcatggc |
24929834 |
T |
|
| Q |
620 |
tttgaaccaaaaccccttcagagatgacagcttcatcaccaattga |
665 |
Q |
| |
|
||||||||||||| ||||| | | |||||||||||| || ||||| |
|
|
| T |
24929835 |
tttgaaccaaaacaccttctgcaacgacagcttcatctccgattga |
24929880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 33844221 - 33844149
Alignment:
| Q |
188 |
tttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaac |
260 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| |||| | ||||| ||||||||| |||||||| |
|
|
| T |
33844221 |
tttggtttttgtgtatttttgaaatgcatttaagttgtaggagataaatagtaagagagagatagagataaac |
33844149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 36646749 - 36646827
Alignment:
| Q |
187 |
ctttggtttttgtgtatttttgaaatgtct--gtaagttgtagaggatataaagtaaaagagagatatagataaacaca |
263 |
Q |
| |
|
||||| ||||||||||||||| ||| ||| |||||||||| | | || ||||||||||||||||| ||||||||||| |
|
|
| T |
36646749 |
ctttgatttttgtgtattttttaaaaatctaagtaagttgtataaggtaaaaagtaaaagagagatagagataaacaca |
36646827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 12119845 - 12119911
Alignment:
| Q |
193 |
tttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaa |
259 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
12119845 |
tttttgtgtatttttgaaatatgtgtaaccaatagaagataaaaagtaagagagagatatagataaa |
12119911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 20809087 - 20809151
Alignment:
| Q |
197 |
tgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaaca |
261 |
Q |
| |
|
||||||||||| |||||| |||| |||||| | |||| ||||||| ||||||||| |||| |||| |
|
|
| T |
20809087 |
tgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagagagagatagagatgaaca |
20809151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University