View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_40 (Length: 385)
Name: NF3726_low_40
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 8758170 - 8758396
Alignment:
| Q |
16 |
caacttgcacctttaggttctcatcctcatcaggcttttggattgttgtagcaacctgtgagttgaacttttgccatgaacaccctgc--accaaaacct |
113 |
Q |
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| T |
8758170 |
caacttgcacctttgggttctcatcctcatcaggcttttggattgctgtagcaacctttgagttgaacttttgccatgaacaccctgcgcaccaaaacct |
8758269 |
T |
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| Q |
114 |
tttgcctgttgcacctttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgggcttaacttttgccttgaaaccctgcacgaaaagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8758270 |
tttgcctgttgcacctttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgggcttaacttttgccttgaaaccctgcacg-aaagc |
8758368 |
T |
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| Q |
214 |
tttagccttgttcaaaatgtcttctacc |
241 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
8758369 |
tttagccttgttcaaaatgtcttctacc |
8758396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 24213786 - 24213560
Alignment:
| Q |
16 |
caacttgcacctttaggttctcatcctcatcaggcttttggattgttgtagcaacctgtgagttgaacttttgccatgaacaccctgcaccaaaaccttt |
115 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |
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| T |
24213786 |
caacttgcacctttgggctctcatcctcatcaggcttttggattgctgtagcaacctgtgagctgaactttttccatgaaaaccctgcaccaaaaccttt |
24213687 |
T |
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| Q |
116 |
tgcctgttgcacctttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgggcttaacttttgccttg-aaaccctgcacgaaaagct |
214 |
Q |
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| T |
24213686 |
tgcctgttgcaactttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgagcttaacttttgccttgaaaaccctgcacgaaaagct |
24213587 |
T |
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| Q |
215 |
ttagccttgttcaaaatgtcttctacc |
241 |
Q |
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| T |
24213586 |
ttagccttgttcaaaatgtcttctacc |
24213560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 251 - 378
Target Start/End: Original strand, 8758429 - 8758556
Alignment:
| Q |
251 |
ttctttaactagattagaagcctgtgcttcttgctttgaaagcttcagtgcctcttcttccatcttcttagttgttgcagcaacttcgcgttccttttca |
350 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8758429 |
ttctttagctagattagaagcctgtgcttcttgctttgaaagcttcagtgcctcttcttccatcttcttagttgttgcagcagcttcgcgttccttttca |
8758528 |
T |
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| Q |
351 |
gcttccactcttgcctcttcctttgctt |
378 |
Q |
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| T |
8758529 |
gcttccactctttcctcttcctttgctt |
8758556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 251 - 378
Target Start/End: Complemental strand, 24213527 - 24213400
Alignment:
| Q |
251 |
ttctttaactagattagaagcctgtgcttcttgctttgaaagcttcagtgcctcttcttccatcttcttagttgttgcagcaacttcgcgttccttttca |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |
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| T |
24213527 |
ttctttaactagattagaagcctgtgcttcttgctttgaaagcttcagtgcctcttcttccagcttcttagttgttgcagcagcttcgcgtgccttttca |
24213428 |
T |
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| Q |
351 |
gcttccactcttgcctcttcctttgctt |
378 |
Q |
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| T |
24213427 |
gcttccactcttgcctcttcctctgctt |
24213400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 41878867 - 41878645
Alignment:
| Q |
16 |
caacttgcacctttaggttctcatcctcatcaggcttttggattgttgtagcaacctgtgagttgaacttttgccatgaacaccctgcaccaaaaccttt |
115 |
Q |
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| T |
41878867 |
caacttgcacctttgggttctcatcctcat-aggcttttggattgctgtagcaacctgtgagctgaacttttcccatgaaaaccctgcaccaaaaccttt |
41878769 |
T |
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| Q |
116 |
tgcctgttgcacctttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgggcttaacttttgccttgaaaccctgcacgaaaagctt |
215 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41878768 |
tgtctgttgcaactttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgtgcttaacttttgccttgaaaccctgcacgaaaagctt |
41878669 |
T |
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| Q |
216 |
tagccttgttcaaaatgtcttcta |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
41878668 |
tagccttgttcaaaatgtcttcta |
41878645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 251 - 378
Target Start/End: Complemental strand, 41878610 - 41878483
Alignment:
| Q |
251 |
ttctttaactagattagaagcctgtgcttcttgctttgaaagcttcagtgcctcttcttccatcttcttagttgttgcagcaacttcgcgttccttttca |
350 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41878610 |
ttctttagctagattagaagcttgtgcttcttgctttgaaagctttagtgcctcttcttccatcttcttagttgttgcagcagcttcgcgttccttttca |
41878511 |
T |
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| Q |
351 |
gcttccactcttgcctcttcctttgctt |
378 |
Q |
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|||||||||||||||||||||| ||||| |
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| T |
41878510 |
gcttccactcttgcctcttcctctgctt |
41878483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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