View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_low_43 (Length: 372)

Name: NF3726_low_43
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_low_43
NF3726_low_43
[»] chr6 (3 HSPs)
chr6 (20-144)||(2422885-2423009)
chr6 (281-362)||(2423128-2423209)
chr6 (163-206)||(2423010-2423053)
[»] chr4 (1 HSPs)
chr4 (286-358)||(21059223-21059295)
[»] scaffold0854 (1 HSPs)
scaffold0854 (292-358)||(770-836)
[»] chr5 (1 HSPs)
chr5 (286-335)||(42454987-42455036)
[»] chr3 (1 HSPs)
chr3 (286-347)||(7754464-7754525)
[»] chr2 (1 HSPs)
chr2 (286-347)||(37133961-37134022)
[»] chr1 (1 HSPs)
chr1 (286-347)||(12159026-12159087)
[»] chr7 (1 HSPs)
chr7 (286-354)||(12087138-12087206)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 2422885 - 2423009
Alignment:
Q  20 taggattgcttgatgatgattttaagtgaagtggatattactttttcaaaagaagcaatagtttcaaactttatctcactttattcaagcctcgttacaa 119  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2422885 taggattgcttgatgatgatttttagtgaagtggatattactttttcaaaagaagcaatagtttcaaaatttatctcactttattcaagcctcgttacaa 2422984  T
Q  120 acttttggaagtccttgaatatccg 144  Q
    |||||||||||||||||||||||||    
T  2422985 acttttggaagtccttgaatatccg 2423009  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 281 - 362
Target Start/End: Original strand, 2423128 - 2423209
Alignment:
Q  281 agaacattgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtctaaattttgtgcctatg 362  Q
    |||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  2423128 agaatattgtcatgtgaagacaatttcattattgtgccttattgttgttctatgtctgattggtctaaattttgtgtctatg 2423209  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 2423010 - 2423053
Alignment:
Q  163 acgcaacatataaatatacgagtaattgactaattgtcactttc 206  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  2423010 acgcaacatataaatacacgagtaattgactaattgtcactttc 2423053  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 21059223 - 21059295
Alignment:
Q  286 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtctaaattttgtgcc 358  Q
    ||||| |||| ||| ||| |||||| |||||| |||| ||| ||||||||||| |||||||| ||||||||||    
T  21059223 attgttgtgtgaaggcaaattcattgttgtgccttatcgtttttctatgtctatttggtctagattttgtgcc 21059295  T

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Target: scaffold0854 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 836 - 770
Alignment:
Q  292 gtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtctaaattttgtgcc 358  Q
    |||| ||||||||||||||||||||| |||| ||| |||||| |||  ||||||||  |||||||||    
T  836 gtgtgaagacaatttcattattgtgccttatcgtttttctatatctggttggtctaggttttgtgcc 770  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 42454987 - 42455036
Alignment:
Q  286 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgt 335  Q
    |||||||||| || |||||||||||||| | | |||||||||||||||||    
T  42454987 attgtcgtgtgaaaacaatttcattattataccttattgttgttctatgt 42455036  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 7754464 - 7754525
Alignment:
Q  286 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtcta 347  Q
    ||||| |||| |||||||||||||| |||||| |||| ||| ||||||||||  ||||||||    
T  7754464 attgttgtgtgaagacaatttcattgttgtgctttatcgtttttctatgtctctttggtcta 7754525  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 37134022 - 37133961
Alignment:
Q  286 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtcta 347  Q
    ||||| |||| ||| ||||||||||||||||| |||| ||| ||||||||||  ||||||||    
T  37134022 attgttgtgtgaaggcaatttcattattgtgccttatcgtttttctatgtctgtttggtcta 37133961  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 12159026 - 12159087
Alignment:
Q  286 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtcta 347  Q
    ||||| |||| |||||||||||||| |||||| ||||  || ||||||||||| ||||||||    
T  12159026 attgttgtgtgaagacaatttcattgttgtgccttatcctttttctatgtctatttggtcta 12159087  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 12087138 - 12087206
Alignment:
Q  286 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtctaaattttg 354  Q
    ||||| |||| |||||||||||||| |||||| |||| ||| |||||||||   ||||||||| |||||    
T  12087138 attgttgtgtgaagacaatttcattgttgtgccttatcgtttttctatgtcggtttggtctaagttttg 12087206  T

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