View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_44 (Length: 370)
Name: NF3726_low_44
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 43844436 - 43844791
Alignment:
| Q |
1 |
aatgcaaaaattctaaaagccaacaaccatgccgggtgaattccctttaggctaggcttccaagtttcatcctcgtacaaaattgatgaagatgatgttt |
100 |
Q |
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| T |
43844436 |
aatgcaaaaattctaaaagccaacaaccatgccgggtgaattccctttaggctaggcttccaagtttcatcctcgtacaaaattgatgatgatgatgttt |
43844535 |
T |
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| Q |
101 |
ctttttggatttccatgtcatcatttcttgttggcttccatgataaaagtaaaacctcgtacttgcatataagaaatgatgaaaagatggttgaaagtat |
200 |
Q |
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| T |
43844536 |
ctttttggatttccatgtcatcatttcttgttggcttccatgataaaagtaaaacctcgtacttgcatataagaaatgatgaaaagatggttgaaagtat |
43844635 |
T |
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| Q |
201 |
gattaatatgacacaaaccaaaaccttccaattcaaccagtaactttggatggttgtatcagaagtcatgatgggatgccaagttcctctggaataggct |
300 |
Q |
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| T |
43844636 |
gattaatatgacacaaaccaaaaccttccaattcaaccagtaactttggatggttgtatcagaagtcatgatgggatgccaagttcctctggaataggct |
43844735 |
T |
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| Q |
301 |
attacaaagttcattgtgttacttctgattattcttcagattgttgaagaaaaatg |
356 |
Q |
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| T |
43844736 |
atcacaaagttcattgtgttacttctgattattcttcagattgttgaagaaaaatg |
43844791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 34894659 - 34894745
Alignment:
| Q |
4 |
gcaaaaattctaaaagccaacaaccatgccgggtgaattccctttaggctaggcttccaagtttcatcctcgtacaaaattgatgaa |
90 |
Q |
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| T |
34894659 |
gcaaaaactcgaaaagccaaaagccaagcagggtgaattcctttcaaacaaggcttccaagtttcatcctcatacaaaattgctgaa |
34894745 |
T |
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