View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_47 (Length: 367)
Name: NF3726_low_47
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 32 - 355
Target Start/End: Complemental strand, 25320583 - 25320253
Alignment:
| Q |
32 |
ttagtttctaaagcagtgtcctt-gattccttctgatttcatagtagtagtactactcttttccaaaagagaatgcgcggtaaaacaaaggtt-----at |
125 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
25320583 |
ttagtttctaaagcagtgtcctttgattccttctgatttcatagtagtagcactactcttttccaaaagagaatgcgcggtaaaataaaggttgatttat |
25320484 |
T |
|
| Q |
126 |
ttagaagtatcttt-gtactcacaactgacccacaaagaaattagaatccatcttcttggcagtgatgattgccagtaataattggcattttctgacaga |
224 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25320483 |
ttagaagtatcttttgaactcacaactgacccacaaagaaattagaatccatcttcttggcagtgatgattgccagtaataattggcattttctgacaga |
25320384 |
T |
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| Q |
225 |
agaacatggtgagaaactgtaccaatttgagtaagttaaatatgcagtttgggatatagtaatttgtgatggatatgattgcacttggcatgtaaacaaa |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25320383 |
agaacatggtgagaaactgtaccaatttgagtaagttaaatatgcagtttgggatatagtaatttgtgatggatatgattgcacttggcatgtaaacaaa |
25320284 |
T |
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| Q |
325 |
aatgacctaccttcaaattcttctcgagtat |
355 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
25320283 |
aatgacctaccttcaaattcttctcgagtat |
25320253 |
T |
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