View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_low_48 (Length: 366)

Name: NF3726_low_48
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_low_48
NF3726_low_48
[»] chr3 (10 HSPs)
chr3 (19-346)||(32463656-32463983)
chr3 (166-325)||(26678166-26678326)
chr3 (133-302)||(31637504-31637674)
chr3 (130-302)||(6999528-6999701)
chr3 (228-325)||(30468702-30468799)
chr3 (189-302)||(16932960-16933073)
chr3 (232-326)||(25737535-25737629)
chr3 (280-322)||(26682368-26682410)
chr3 (54-104)||(26678415-26678465)
chr3 (189-302)||(12723453-12723566)
[»] chr2 (6 HSPs)
chr2 (103-325)||(17902756-17902974)
chr2 (205-323)||(39648250-39648368)
chr2 (228-325)||(12997272-12997369)
chr2 (228-325)||(26423239-26423336)
chr2 (196-275)||(3121148-3121227)
chr2 (206-276)||(26999275-26999345)
[»] chr5 (6 HSPs)
chr5 (133-302)||(33305019-33305189)
chr5 (228-325)||(22697619-22697716)
chr5 (151-325)||(18678436-18678611)
chr5 (228-325)||(31089447-31089544)
chr5 (228-325)||(24442586-24442683)
chr5 (205-326)||(20863992-20864113)
[»] chr1 (5 HSPs)
chr1 (133-302)||(35322254-35322424)
chr1 (228-325)||(45274306-45274403)
chr1 (205-302)||(14585829-14585926)
chr1 (189-302)||(33737541-33737654)
chr1 (245-297)||(31592302-31592354)
[»] chr4 (6 HSPs)
chr4 (130-302)||(6682678-6682851)
chr4 (228-325)||(36220790-36220887)
chr4 (232-322)||(33037116-33037206)
chr4 (228-325)||(12702007-12702104)
chr4 (228-325)||(12904102-12904199)
chr4 (189-302)||(36480842-36480955)
[»] chr6 (3 HSPs)
chr6 (133-302)||(13997246-13997416)
chr6 (189-259)||(1856238-1856308)
chr6 (189-302)||(330163-330276)
[»] scaffold0233 (1 HSPs)
scaffold0233 (116-275)||(19363-19524)
[»] chr8 (1 HSPs)
chr8 (228-325)||(17904717-17904814)
[»] chr7 (4 HSPs)
chr7 (212-318)||(36065707-36065813)
chr7 (247-325)||(5045512-5045590)
chr7 (189-302)||(48207482-48207595)
chr7 (239-276)||(18860560-18860597)
[»] scaffold0479 (1 HSPs)
scaffold0479 (189-302)||(10779-10892)
[»] scaffold0112 (1 HSPs)
scaffold0112 (96-217)||(23815-23937)
[»] scaffold0570 (1 HSPs)
scaffold0570 (97-298)||(4922-5124)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 32463983 - 32463656
Alignment:
Q  19 gagcttgtattcgagatgtaggaggaaactttatgatagccaaaactgaatggctcacccccataattgatgttgacatgggtgaaagaactcaacctgg 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32463983 gagcttgtattcgagatgtaggaggaaactttgtgatagccaaaactgaatggctcacccccataatcgatgttgacatgggtgaaagaactcaacctgg 32463884  T
Q  119 tgaacatagattttgaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgatttatgacaataatcaatgattgtagacac 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32463883 tgaacatagattttgaaacggactctaaagttatggcacatagcatatatgggaaggacggtgtctttgatttatgacaataatcaatgattgtagacac 32463784  T
Q  219 ttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgcta 318  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32463783 ttgttgggaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaagaaaacaccacataatgcta 32463684  T
Q  319 gtttccaaatggcttaaatgcacttttg 346  Q
    ||||||| ||||||||||||||||||||    
T  32463683 gtttccagatggcttaaatgcacttttg 32463656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 166 - 325
Target Start/End: Complemental strand, 26678326 - 26678166
Alignment:
Q  166 tatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattagga 264  Q
    |||||||| |||  ||||| |||||| ||| ||||||| ||||||||||||||||| |||||||||||| |||||||||  ||||| ||||| |||||||    
T  26678326 tatgggaaggacaatgtctctgatttcatggcaataataaatgattgtagacacttattggaaactgatctaacgaactcggatgtaaagttcattagga 26678227  T
Q  265 gacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    |||||||||||  | ||||||||||||||| ||| ||| ||||| ||||| ||||||||||    
T  26678226 gacaagccaatggtgttgcccatagtctagataaagaagcaccatataatactagtttcca 26678166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 302
Target Start/End: Original strand, 31637504 - 31637674
Alignment:
Q  133 gaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaactg 231  Q
    ||||| ||||| |||||||||||  ||||||||||||| || || ||||||| |||||| ||| |||||||||||||||||||||||||||||   || |    
T  31637504 gaaacagactcaaaagttgtggctgatagcatatatggcaaggagggtgtctctgatttcatggcaataatcaatgattgtagacacttgttgagtaccg 31637603  T
Q  232 atttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 302  Q
    |||||  ||||| |||||||||||| ||||||||||||| ||||  | |||| |||||| |||||||||||    
T  31637604 atttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttagctaaggaa 31637674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 302
Target Start/End: Complemental strand, 6999701 - 6999528
Alignment:
Q  130 tttgaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaa 228  Q
    ||||||||  |||| |||||||||||  |||| |||||||| || || ||||||| |||||| ||| |||||||||||||||||||||||||||||   |    
T  6999701 tttgaaacaaactcaaaagttgtggctgatagaatatatggcaaggagggtgtctctgatttcatggcaataatcaatgattgtagacacttgttgagta 6999602  T
Q  229 ctgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 302  Q
    |  |||||  ||||| |||||||||||| ||||||||||||| ||||  | | || |||||| |||||||||||    
T  6999601 ccaatttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgtggctcatagtttagctaaggaa 6999528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 30468799 - 30468702
Alignment:
Q  228 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| |  |||||||| |||||||| |||| ||| | || |||||||||||||    
T  30468799 actgatttagcgaactctgatgtgaagttcattaggagacaagccaatagtgctgcccataatctagctagggaagcactaaatcatgctagtttcca 30468702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 16933073 - 16932960
Alignment:
Q  189 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 288  Q
    |||||| |||| ||| ||||||||||||||||| ||   || |||||||| |||| ||||||||  || ||||||||||||||||||  | |||||||||    
T  16933073 tttatggcaattatccatgattgtagacacttgctgatgaccgatttaacaaactctgatgtgagtttaattaggagacaagccaatggtgttgcccata 16932974  T
Q  289 gtctagctaaggaa 302  Q
    || |||||| ||||    
T  16932973 gtttagctagggaa 16932960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 25737535 - 25737629
Alignment:
Q  232 atttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttccaa 326  Q
    ||||| |||||| |||||| |||||||||||||||||| || ||||| |||||||||| ||||||| | || ||  |||| |||||| |||||||    
T  25737535 atttagcgaactctgatgtaaagtttattaggagacaaacctataatgttgcccatagcctagctaggaaagcattacatcatgctaatttccaa 25737629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 26682368 - 26682410
Alignment:
Q  280 ttgcccatagtctagctaaggaaacaccacataatgctagttt 322  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    
T  26682368 ttgcccatagtctagttaaggaaacaccatataatgctagttt 26682410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 26678465 - 26678415
Alignment:
Q  54 atagccaaaactgaatggctcacccccataattgatgttgacatgggtgaa 104  Q
    ||||| ||||||| |||| |||| |||||| ||||||||||||||||||||    
T  26678465 atagcaaaaactgcatggatcactcccatacttgatgttgacatgggtgaa 26678415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 12723566 - 12723453
Alignment:
Q  189 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 288  Q
    |||||| |||| ||| ||||||||||||||||||||   || |||||||  |||| ||||||||  || ||||||||| ||  ||||  | |||||||||    
T  12723566 tttatggcaattatccatgattgtagacacttgttgatgaccgatttaataaactctgatgtgagtttaattaggagataaatcaatggtgttgcccata 12723467  T
Q  289 gtctagctaaggaa 302  Q
    || |||||| ||||    
T  12723466 gtttagctagggaa 12723453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 9e-52; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 103 - 325
Target Start/End: Original strand, 17902756 - 17902974
Alignment:
Q  103 aaagaactcaacctggtgaacatagattttgaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataa 201  Q
    ||||||||||| ||||||||||| |||||  || |||||||||||||||||||  |||||||||||||||| |  ||||||| |||||| ||| ||||||    
T  17902756 aaagaactcaagctggtgaacatggatttaaaagcggactctaaagttgtggcggatagcatatatgggaagggtggtgtctctgatttcatggcaataa 17902855  T
Q  202 tcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaagga 301  Q
    |||||||||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||||||| ||||  | |||||||||||     | ||||    
T  17902856 tcaatgattgtagacacttgttagaaactgatttaatgaacttggatgtgaagtttattaggagacaagtcaatggtgttgcccatagt-----ttagga 17902950  T
Q  302 aacaccacataatgctagtttcca 325  Q
    |  |||||||||||||||||||||    
T  17902951 agtaccacataatgctagtttcca 17902974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 323
Target Start/End: Original strand, 39648250 - 39648368
Alignment:
Q  205 atgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaac 304  Q
    ||||||||||||||||||||   ||||||||| ||||||  ||||||||||| || | |||||| ||||||| | ||||||||||| ||||||||||| |    
T  39648250 atgattgtagacacttgttgatgactgatttagcgaactcagatgtgaagttcatcaagagacaggccaatagtgttgcccatagtttagctaaggaagc 39648349  T
Q  305 accacataatgctagtttc 323  Q
    || | || |||||||||||    
T  39648350 actatattatgctagtttc 39648368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 12997272 - 12997369
Alignment:
Q  228 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| |  |||||||| |||||||| |||| ||| | || |||||||||||||    
T  12997272 actgatttagcgaactctgatgtgaagttcattaggagacaagccaatagtgctgcccataatctagctagggaagcactaaatcatgctagtttcca 12997369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 26423239 - 26423336
Alignment:
Q  228 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    |||||||||  ||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||||||| |||| ||| | || |||||||||||||    
T  26423239 actgatttagtgaactctgatgtgaagttcattaggagacaagccaatagtgttgcccataatctagctagggaagcactaaatcatgctagtttcca 26423336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 275
Target Start/End: Original strand, 3121148 - 3121227
Alignment:
Q  196 caataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaat 275  Q
    ||||||||||||||||||||||||| || || || |||||| ||||||  ||||||||||| ||| | ||||||||||||    
T  3121148 caataatcaatgattgtagacactttttagacaccgatttatcgaactcggatgtgaagttcattcgaagacaagccaat 3121227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 26999345 - 26999275
Alignment:
Q  206 tgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaata 276  Q
    |||||||||||||||||||   | |||||||  ||||| |||| ||||||| ||||| |||||||||||||    
T  26999345 tgattgtagacacttgttgatgattgatttagtgaactctgatttgaagttcattagaagacaagccaata 26999275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 302
Target Start/End: Complemental strand, 33305189 - 33305019
Alignment:
Q  133 gaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaactg 231  Q
    ||||| ||||| |||||||||||  ||||||||||||| || || ||||||| |||||| ||| |||||||||||||||||||||||||||||   || |    
T  33305189 gaaacagactcaaaagttgtggctgatagcatatatggcaaggagggtgtctctgatttcatggcaataatcaatgattgtagacacttgttgagtaccg 33305090  T
Q  232 atttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 302  Q
    |||||  ||||| |||||||||||| ||||||||||||| ||||  | |||| |||||| |||||||||||    
T  33305089 atttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttagctaaggaa 33305019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 22697716 - 22697619
Alignment:
Q  228 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||||||| |||| ||| | || |||||||||||||    
T  22697716 actgatttagcgaactctgatgtgaagttcattaggagacaagccaatagtgttgcccataatctagctagggaagcactaaatcatgctagtttcca 22697619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 151 - 325
Target Start/End: Original strand, 18678436 - 18678611
Alignment:
Q  151 gtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatg 249  Q
    |||||| ||||||||||||| || |||| ||||| |||||| ||| ||||||| |||||||||||||| ||||| |  || ||||||   |||| | |||    
T  18678436 gtggcagatagcatatatggaaaggacgatgtctctgatttcatggcaataattaatgattgtagacatttgttaggtaccgatttagtaaactctaatg 18678535  T
Q  250 tgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    |||  || ||||||||||||||||||| | |||| |||||| ||||||||||| ||| | | ||||||||| ||||    
T  18678536 tgagtttcattaggagacaagccaatagtgttgctcatagtttagctaaggaatcactatacaatgctagtctcca 18678611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 31089447 - 31089544
Alignment:
Q  228 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| |  |||||||| |||||||| |||| ||| | || |||||||||||||    
T  31089447 actgatttagcgaactctgatgtgaagttcattaggagacaagccaatagtgctgcccataatctagctagggaagcactaaatcatgctagtttcca 31089544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 24442586 - 24442683
Alignment:
Q  228 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    ||||||||| |||||| |||||||||||| |||||||||||| |||||| | ||||||||| ||||||||  ||| ||| | || |||||||||||||    
T  24442586 actgatttagcgaactctgatgtgaagttcattaggagacaaaccaatagtgttgcccataatctagctagagaagcactaaatcatgctagtttcca 24442683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 326
Target Start/End: Original strand, 20863992 - 20864113
Alignment:
Q  205 atgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaac 304  Q
    ||||||||| ||||||||||   ||| ||||||| ||||   || ||||||||||||| ||||||||||| | | |||| |||||  |||||| |||  |    
T  20863992 atgattgtaaacacttgttgatgactaatttaacaaactccaatatgaagtttattagaagacaagccaacagtgttgctcatagcatagctagggaggc 20864091  T
Q  305 accacataatgctagtttccaa 326  Q
    |  ||||||||||| |||||||    
T  20864092 attacataatgctattttccaa 20864113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 302
Target Start/End: Original strand, 35322254 - 35322424
Alignment:
Q  133 gaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaactg 231  Q
    ||||| ||||| |||||||||||  ||||||||||||| || || ||||||| |||||| ||| |||||||||||||||||||||||||||||   || |    
T  35322254 gaaacagactcaaaagttgtggctgatagcatatatggcaaggagggtgtctctgatttcatggcaataatcaatgattgtagacacttgttgagtaccg 35322353  T
Q  232 atttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 302  Q
    |||||  ||||| |||||||||||| ||||||||||||| ||||  | |||| |||||| |||||||||||    
T  35322354 atttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttagctaaggaa 35322424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 45274403 - 45274306
Alignment:
Q  228 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| |  ||| |||| |||||||| |||| ||| | || |||||||||||||    
T  45274403 actgatttagcgaactctgatgtgaagttcattaggagacaagccaatagtgctgctcataatctagctagggaagcactaaatcatgctagtttcca 45274306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 14585829 - 14585926
Alignment:
Q  205 atgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 302  Q
    ||||||||| ||||||||||   || || ||| | |||| ||||||||| |||||||||||||||||||||  | ||||||||||| |||||| ||||    
T  14585829 atgattgtaaacacttgttgatgaccgacttagcaaactctgatgtgaattttattaggagacaagccaatggtgttgcccatagtttagctagggaa 14585926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 33737654 - 33737541
Alignment:
Q  189 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 288  Q
    |||||| |||||||  | ||||||||||||||||||   || ||||||   |||| ||||||||  || ||||||||||||||||||  | |||||||||    
T  33737654 tttatggcaataattcaagattgtagacacttgttgatgaccgatttagtaaactctgatgtgagtttcattaggagacaagccaatggtgttgcccata 33737555  T
Q  289 gtctagctaaggaa 302  Q
    || |||||| ||||    
T  33737554 gtttagctagggaa 33737541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 31592302 - 31592354
Alignment:
Q  245 tgatgtgaagtttattaggagacaagccaataatattgcccatagtctagcta 297  Q
    |||||||| |||||||||||||||||||||| |  |||| |||||| ||||||    
T  31592302 tgatgtgaggtttattaggagacaagccaatgaagttgctcatagtttagcta 31592354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 302
Target Start/End: Original strand, 6682678 - 6682851
Alignment:
Q  130 tttgaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaa 228  Q
    |||||||| ||||| |||||||||||  ||||||||||||| || || ||||||| |||||| ||| |||||||||||||||||||||||||||||   |    
T  6682678 tttgaaacagactcaaaagttgtggctgatagcatatatggcaaggagggtgtctctgattttatggcaataatcaatgattgtagacacttgttgagta 6682777  T
Q  229 ctgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 302  Q
    | ||||||  ||||| |||||| ||||| ||||||||||||| ||||  | |||| |||||| |||||||||||    
T  6682778 ccgatttagtgaactctgatgtaaagttcattaggagacaagtcaatggtgttgctcatagtttagctaaggaa 6682851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 36220887 - 36220790
Alignment:
Q  228 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    ||||||||| |||||| |||||||||||  ||||||||||||||||||| ||||||||||| |||||||| |||| ||| | || |||||||||||||    
T  36220887 actgatttagcgaactctgatgtgaagtccattaggagacaagccaatagtattgcccataatctagctagggaagcactaaatcatgctagtttcca 36220790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 33037206 - 33037116
Alignment:
Q  232 atttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagttt 322  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||| | ||||||||||| |||||| |||  ||| | || ||||||||||    
T  33037206 atttaacaaactctgatgtgaagtttattaggagacaaaccaatagtgttgcccatagtttagctagggaggcactaaattatgctagttt 33037116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 12702104 - 12702007
Alignment:
Q  228 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    ||||||||| |||||| |||||||||||| |||||||||||| |||||| | ||||| ||| |||| ||| |||| ||| | || || ||||||||||    
T  12702104 actgatttagcgaactctgatgtgaagttcattaggagacaaaccaatagttttgcctataatctaactagggaagcactaaatcatcctagtttcca 12702007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 12904102 - 12904199
Alignment:
Q  228 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    ||||||||| ||||||   |||||||||| ||||||||||||||||||| | ||||| ||| |||| ||| |||| ||| | || || ||||||||||    
T  12904102 actgatttagcgaactcatatgtgaagttcattaggagacaagccaatagtgttgcctataatctaactagggaagcactaaatcatcctagtttcca 12904199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 36480955 - 36480842
Alignment:
Q  189 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 288  Q
    |||||| |||||||  | ||||||||||||||||||   || ||||||   |||| ||||||||  || ||||||||||||||||||  | |||||||||    
T  36480955 tttatggcaataattcaagattgtagacacttgttgatgaccgatttagtaaactctgatgtgagtttcattaggagacaagccaatggtgttgcccata 36480856  T
Q  289 gtctagctaaggaa 302  Q
    || |||||| ||||    
T  36480855 gtttagctagggaa 36480842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 302
Target Start/End: Complemental strand, 13997416 - 13997246
Alignment:
Q  133 gaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaactg 231  Q
    ||||| ||||| |||||||||||  ||| ||||||||| || || ||||||| |||||| ||| |||||||||||||||||||||||||||||   || |    
T  13997416 gaaacagactcaaaagttgtggctgataacatatatggcaaggagggtgtctctgattttatggcaataatcaatgattgtagacacttgttgagtaccg 13997317  T
Q  232 atttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 302  Q
    |||||  ||||| |||||| ||||| ||||||||||||| ||||  | |||| |||||| |||||||||||    
T  13997316 atttagtgaactctgatgttaagttcattaggagacaagtcaatggtgttgctcatagtttagctaaggaa 13997246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 1856308 - 1856238
Alignment:
Q  189 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttat 259  Q
    |||||| |||||||||| ||||||||||| |||||||  ||||||||||  |||| |||||||||||||||    
T  1856308 tttatggcaataatcaaagattgtagacaattgttggtcactgatttaataaactctgatgtgaagtttat 1856238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 302
Target Start/End: Original strand, 330163 - 330276
Alignment:
Q  189 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 288  Q
    |||||| |||||||  ||||||||||||||||||||   || || |||   |||| ||||||||  |||||||||||||||||||||  | |||||||||    
T  330163 tttatggcaataattcatgattgtagacacttgttgatgaccgacttagtaaactctgatgtgagttttattaggagacaagccaatggtgttgcccata 330262  T
Q  289 gtctagctaaggaa 302  Q
    || |||||| ||||    
T  330263 gtttagctagggaa 330276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 275
Target Start/End: Complemental strand, 19524 - 19363
Alignment:
Q  116 tggtgaacatagattttgaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtag 214  Q
    ||||| |||| ||||| ||||| ||||  ||||||| |||  ||||||||||||| || || |||||||||||||| ||| ||||||| |||||||||||    
T  19524 tggtgcacatggatttcgaaacagactgaaaagttgcggctgatagcatatatggcaaggatggtgtctttgatttcatggcaataataaatgattgtag 19425  T
Q  215 acacttgttggaaactgatttaacg-aactatgatgtgaagtttattaggagacaagccaat 275  Q
    |||||||||| | |||||||||  | |||| |||||||||||| ||||||||||||| ||||    
T  19424 acacttgttgaatactgatttagtgaaactctgatgtgaagttcattaggagacaagtcaat 19363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 17904814 - 17904717
Alignment:
Q  228 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||||||| |||||||| | || |||||||||||||    
T  17904814 actgatttagcgaactctgatgtgaagttcattaggagacaagccaatagtgttgcccataatctagctagggaaacactaaatcatgctagtttcca 17904717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 212 - 318
Target Start/End: Original strand, 36065707 - 36065813
Alignment:
Q  212 tagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacat 311  Q
    ||||||||||||||  ||||||||| |||||| || ||||||||| |||| ||||||| ||||| ||||||| ||||||||||| | |||| ||||||||    
T  36065707 tagacacttgttggccactgatttagcgaactttgttgtgaagttcattaagagacaaaccaatgatattgctcatagtctagcgagggaagcaccacat 36065806  T
Q  312 aatgcta 318  Q
     ||||||    
T  36065807 catgcta 36065813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 5045512 - 5045590
Alignment:
Q  247 atgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 325  Q
    |||||||||||||||||||||||||||||| | ||||||||| |||||||| |||| ||| | || |||||||||||||    
T  5045512 atgtgaagtttattaggagacaagccaatagtgttgcccataatctagctagggaagcactaaatcatgctagtttcca 5045590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 302
Target Start/End: Original strand, 48207482 - 48207595
Alignment:
Q  189 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 288  Q
    |||||| |||||||  |||||||||||||||| |||   || || |||   |||| ||||||||  |||||||||||||||||||||  | |||||||||    
T  48207482 tttatggcaataattcatgattgtagacactttttgatgaccgacttagtaaactctgatgtgagttttattaggagacaagccaatggtgttgcccata 48207581  T
Q  289 gtctagctaaggaa 302  Q
    || |||||| ||||    
T  48207582 gtttagctagggaa 48207595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 18860597 - 18860560
Alignment:
Q  239 gaactatgatgtgaagtttattaggagacaagccaata 276  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  18860597 gaactatgatgtgaagtttattaggagataagcaaata 18860560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 302
Target Start/End: Original strand, 10779 - 10892
Alignment:
Q  189 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 288  Q
    |||||| |||| ||| ||||||||||||||||||||   || |||||||| |||| ||||||||  || ||||||||||||||||||  | |||||||||    
T  10779 tttatgccaattatccatgattgtagacacttgttgatgaccgatttaacaaactctgatgtgagtttaattaggagacaagccaatcgtgttgcccata 10878  T
Q  289 gtctagctaaggaa 302  Q
    || |||||||||||    
T  10879 gtttagctaaggaa 10892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 23815 - 23937
Alignment:
Q  96 atgggtgaaagaactcaacctggtgaacatagattttgaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atg 194  Q
    |||||| ||||| || |||  |||| |||| ||||| ||||| ||||| ||||||| |||   |||||||||||| || || |||||||  ||||| |||    
T  23815 atgggtaaaagagctaaacacggtgcacatcgatttcgaaacagactcaaaagttgcggctgttagcatatatggaaaggagggtgtctcagatttcatg 23914  T
Q  195 acaataatcaatgattgtagaca 217  Q
     ||||||||||||||||||||||    
T  23915 gcaataatcaatgattgtagaca 23937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 5124 - 4922
Alignment:
Q  97 tgggtgaaagaactcaacctggtgaacatagattttgaaacggactctaaagttgtggcacatagcatatatg--ggaatgacggtgtctttgattt-at 193  Q
    ||||||||||| || ||| |||||| ||| ||||||||||| ||||| ||  |||||||| ||||  | |||   ||||  | ||||||| |||||| ||    
T  5124 tgggtgaaagagcttaacatggtgagcatggattttgaaacagactcaaagattgtggcagatagtgtttataaaggaa--atggtgtctctgattttat 5027  T
Q  194 gacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtcta 293  Q
    | |||||||  | ||||||||||||||||||   || ||||||   |||| ||||||||  || ||||| ||||||||||||  | ||||||||||| ||    
T  5026 ggcaataattcaagattgtagacacttgttgatgaccgatttagtaaactctgatgtgagtttcattagaagacaagccaatggtgttgcccatagttta 4927  T
Q  294 gctaa 298  Q
    |||||    
T  4926 gctaa 4922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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