View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_52 (Length: 353)
Name: NF3726_low_52
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 3226193 - 3226515
Alignment:
| Q |
16 |
gttttgtgttttattttctccttagactggnnnnnnnncctttatatattgtgtatgtgtttatctatannnnnnnnnnnnnnnnngcttataaatgcca |
115 |
Q |
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| T |
3226193 |
gttttgtgttttattttctccttagactggttttttttcctttatatattgtgtatgtgtttatctatattttttttttcttttttgcttataaatgcca |
3226292 |
T |
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| Q |
116 |
aggtcttgagattagtttaatctcttaatgcacaagaccttggtaaagcttataccaatcaaaagcaagtaagtatggaccttggcataatccttggttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3226293 |
aggtcttgagattagtttaatctcttaatgcacaagaccttggtaaagcttataccaatcaaaagcaagtaagtatggaccttggcataatccttggttt |
3226392 |
T |
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| Q |
216 |
gtgttcattttatggagtacaaatttgggaatggttaaagaatcaatggcagtccttaaaagtttgaagagtgattctaaatttagcaacggaaaagatg |
315 |
Q |
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| T |
3226393 |
gtgttcattttatggagtacaaatttgggaatggttaaagaatcaatggcagtccttaaaagtttgaagagtgattctaaatttagcaacggaaaagatg |
3226492 |
T |
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| Q |
316 |
gacaacctttgtgtatttttaag |
338 |
Q |
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| T |
3226493 |
gacaacctttgtgtatttttaag |
3226515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 312
Target Start/End: Original strand, 3221457 - 3221604
Alignment:
| Q |
166 |
tataccaatcaaaagcaagtaagtatggaccttggcataatccttggtttgtgttcattttatggagtacaaatttgggaatggttaaagaatcaatggc |
265 |
Q |
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||||||||||||| ||||| | | |||||||| | ||||||||||||||||||| ||| || ||||| |||||| || ||||||||| || ||||||| |
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| T |
3221457 |
tataccaatcaaacccaagttaatttggaccttagaataatccttggtttgtgtt-gtttgatagagtataaatttagggatggttaaataaacaatggc |
3221555 |
T |
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| Q |
266 |
agtccttaaaagtttgaagag--tgattctaaatttagcaacggaaaag |
312 |
Q |
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| T |
3221556 |
attccttgaaagtttgatgggtttgattctaaatttagcattggaaaag |
3221604 |
T |
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