View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_55 (Length: 350)
Name: NF3726_low_55
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 44348815 - 44349154
Alignment:
| Q |
1 |
ggttcttaacatttctagtgctgtttttaacctgggcttgtcctggtatatcaacttgtttttccttatctgcaaccattgtcaaaggaggtcgtgtatc |
100 |
Q |
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| T |
44348815 |
ggttcttaacatttctagtgctgtttttaacctgggcttgtcctggtatatcaacttgtttttccttatctgcaaccattgtcaaaggaggtcgtgtatc |
44348914 |
T |
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| Q |
101 |
aaatgaaacattattagctaaacttcaagtcattttaagaaagcctcaattatagattaaataaaaaacttgagatatatttacaagaaaggagaaaaaa |
200 |
Q |
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| T |
44348915 |
aaatgaaacattattagctaaacttcaagtcattttaagaaagcctcaattatagattaaataaaaaacttgagatatatttacaagaaaggagaaaaaa |
44349014 |
T |
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| Q |
201 |
cctcaccctttctcgtttggctggatctttgaaggcgaaattgatgacatcctttgtgggaactatcttccactttggtattatatcttcaactttagtc |
300 |
Q |
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| T |
44349015 |
cctcaccctttctcgtttggccggatctttgaaagcgaaattgatgacatcctttgtgggaactatcttccacttaggtattatatcttcaactttagtc |
44349114 |
T |
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| Q |
301 |
aatatgttgatgacaacttggtgtggcttcatcttctctg |
340 |
Q |
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| T |
44349115 |
aatatgttgatgacaacttggtgtggcttcatcttctctg |
44349154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 39562373 - 39562320
Alignment:
| Q |
19 |
tgctgtttttaacctgggcttgtcctggtatatcaacttgtttttccttatctg |
72 |
Q |
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| T |
39562373 |
tgctgtttttaaccttggcttgtcctgatatatcaacttgtttttccttatctg |
39562320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 39562230 - 39562158
Alignment:
| Q |
203 |
tcaccctttctcgtttggctggatctttgaaggcgaaattgatgacatcctttgtgggaactatcttccactt |
275 |
Q |
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||||| |||| ||||||| ||||||||||||| ||| ||||||||||||||| |||||||| |||||||| |
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| T |
39562230 |
tcaccatttcccgtttggtgtgatctttgaaggctgaatcgatgacatcctttgtcggaactattttccactt |
39562158 |
T |
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