View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_56 (Length: 349)
Name: NF3726_low_56
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 36171020 - 36171360
Alignment:
| Q |
1 |
aagttgcaatagtgcaaggaaaaggattgttagctctggttatgccaaaaacatagacaaactagcagatgctgaagtatcttgtgatgctaaaaaactt |
100 |
Q |
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| T |
36171020 |
aagttgcaatagtgcaaggaaaaagattgttagctctggttatgccaaaaacatagacaaactagcagatgctgaagtatcttgtgatgctaaaaaactt |
36171119 |
T |
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| Q |
101 |
gtcaagaaactatccacaaacagattccgcagtatgttgaatggaatctggcactcatgaatgtaattcatcaattatttttctctc-nnnnnnnaactg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36171120 |
gtcaagaaactatccacaaacagattccgcagtatgttgaatggaatctggcactcatgaatgtaattcatcaattatttttctctcttttttttaactg |
36171219 |
T |
|
| Q |
200 |
tatatttactttagtgtcttacaagttttgctaatttgtttatccctattcaatatgctttctgtttaatttcattggcctttgcctatgataacagtag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171220 |
tatatttactttagtgtcttacaagttttgctaatttgtttatccctattcaatatgctttctgtttaatttcattggcctttgcctatgataacagtag |
36171319 |
T |
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| Q |
300 |
cacacaccattatgttgattgtaatcagagttagtgatgat |
340 |
Q |
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| T |
36171320 |
cacacaccattatgttgattgtaatcagagttagtgatgat |
36171360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 1286022 - 1285681
Alignment:
| Q |
1 |
aagttgcaatagtgcaaggaaaaggattgttagctctggttatgccaaaaacatagacaaactagcagatgctgaagtatcttgtgatgctaaaaaactt |
100 |
Q |
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|||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||| | |
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| T |
1286022 |
aagttgcaatagtgcacggaaaaagattgttagttctggttatgccaaaaacatagacaaactagcagaggctgaaatttcttgtgatcctaaaaaacct |
1285923 |
T |
|
| Q |
101 |
gtcaagaaactatccacaaacagattccgcagtatgttgaatggaatctggcactcatgaatgtaattcatcaattatttttctctcnnnnnnnaactgt |
200 |
Q |
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||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
1285922 |
gtcaagaaattatccacaaacaaattccgaagtatgttgaatggaatccggcactcatgaatgtaattcatcaattatttttatctttttttaaaactgt |
1285823 |
T |
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| Q |
201 |
atatttactttagtgtcttacaagttttgctaatttgtttatccctattcaatatgctttctgtttaatttcattggcctttgcctatgataacagtagc |
300 |
Q |
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||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||| |||||||| |
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| T |
1285822 |
ata-ttactttagtgtcttacaaattttgctaatttgtttatccccattcaatatgctttctgttttatttcattggcc-ttgtctatgacaacagtagg |
1285725 |
T |
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| Q |
301 |
acacacc----attatgttgattgtaatcagagttagtgatgat |
340 |
Q |
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||| ||| |||||||||||||||||||||||||| |||||| |
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| T |
1285724 |
acataccattaattatgttgattgtaatcagagttagcgatgat |
1285681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 569505 - 569446
Alignment:
| Q |
53 |
atagacaaactagcagatgctgaagtatcttgtgatgctaaaaaacttgtcaagaaacta |
112 |
Q |
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||||| ||||| ||||| |||||||| |||| ||||||||||||||||||| ||||||| |
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| T |
569505 |
atagagaaactggcagaggctgaagtttcttctgatgctaaaaaacttgtctggaaacta |
569446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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