View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_low_57 (Length: 349)

Name: NF3726_low_57
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_low_57
NF3726_low_57
[»] chr1 (1 HSPs)
chr1 (235-332)||(7742611-7742705)
[»] chr3 (2 HSPs)
chr3 (239-287)||(40864400-40864448)
chr3 (96-148)||(40863619-40863671)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 235 - 332
Target Start/End: Original strand, 7742611 - 7742705
Alignment:
Q  235 catgcatgcaggcttcattatcggtcctgatgtgcaagacgaagatgataatactaatagagggagagcacatcaccatcaccagccaccacaccaag 332  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7742611 catgcatgcaggcttcattatcggt---gatgtgcaagacgaagatgataatactaatagagggagagcgcatcaccatcaccagccaccacaccaag 7742705  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 40864400 - 40864448
Alignment:
Q  239 catgcaggcttcattatcggtcctgatgtgcaagacgaagatgataata 287  Q
    ||||||||||||||| | || ||||||||||||||||||||||||||||    
T  40864400 catgcaggcttcattgttgggcctgatgtgcaagacgaagatgataata 40864448  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 40863619 - 40863671
Alignment:
Q  96 aaggtttctgctttgaatttctttgatgaagaggctgatgttgattctgatga 148  Q
    |||||||| ||||  ||||||||||| |||||||||| ||||||||| |||||    
T  40863619 aaggtttccgcttcaaatttctttgacgaagaggctgctgttgattcggatga 40863671  T

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